PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P03660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TALE
Protein Properties Length: 291aa    MW: 32887.4 Da    PI: 6.1865
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P03660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.2e-082292731354
                            HHHHHHHHH...SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  13 eeLeelFek...nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                             +L++  ++    +yp+++++++L +++gL+ +q+ +WF N+R +
  GSMUA_Achr1P03660_001 229 SILKQWWQQnskWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 273
                            56666666411258*****************************87 PP
2ELK26.41.6e-09194215122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            ELK +L++++++++ ++++E++
  GSMUA_Achr1P03660_001 194 ELKIELKQGFRSRIEDVREEIL 215
                            9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.5E-152973IPR005540KNOX1
PfamPF037904.3E-143172IPR005540KNOX1
SMARTSM012563.3E-2484139IPR005541KNOX2
PfamPF037915.3E-1887138IPR005541KNOX2
PROSITE profilePS512139.184194214IPR005539ELK domain
PROSITE profilePS5007111.726214277IPR001356Homeobox domain
SMARTSM003894.6E-11216281IPR001356Homeobox domain
SuperFamilySSF466897.27E-16217279IPR009057Homeodomain-like
CDDcd000862.84E-12217278No hitNo description
Gene3DG3DSA:1.10.10.601.6E-24221279IPR009057Homeodomain-like
PfamPF059203.7E-17234273IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MQSDQGLGME MGVGAGGECS SSAAAAEQQL LKAEMAVHPL WEQLLGAHVG CLRVATPIDH  60
LPLIDAQLAQ SHHLVRSYAA GRRPLLSPHE KQELDSFLAQ YLMVLCSFRE QLQQHVRVHA  120
VEAVIACREI EQSLQDLTGA TLEEGSGATM SDDEDELQMD CPLDISVEGH DMMGFGPLLP  180
TESERSLMER VRQELKIELK QGFRSRIEDV REEILRKRRA GKLPGDTTSI LKQWWQQNSK  240
WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNSSQ SATTLKSKRK K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270290RKRNWHNSSQSATTLKSKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389816.10.0PREDICTED: homeobox protein knotted-1-like 3
SwissprotQ94LW31e-165KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLM0RWS40.0M0RWS4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P03660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-153KNOTTED-like homeobox of Arabidopsis thaliana 7