PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P03770_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family BBR-BPC
Protein Properties Length: 260aa    MW: 29179 Da    PI: 9.3496
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P03770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind59.71.4e-1811121103
              GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 
                            mdd g+re  r+k+ +y+        p+++lken++++l+  +aer+++++er++a++ekkaa+ erdma+lqrd+a+aern a++er
  GSMUA_Achr1P03770_001   1 MDDVGQREngRHKTdQYRtahaqwmlPQHQLKENQTIKLL--MAEREKALQERDMAITEKKAALVERDMAYLQRDAAVAERNSAIIER 86 
                            999999988999999999999999997789**99888886..88******************************************** PP

              GAGA_bind  78 dnkllalllvenslasalpvgvqvls 103
                            dn++ al++++++ +s + ++ +  +
  GSMUA_Achr1P03770_001  87 DNAIGALEYARENGMSGNCATGKQTR 112
                            *******9988776654433333333 PP
2GAGA_bind2662e-81129260165301
              GAGA_bind 165 kkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252
                            ++ kk +    ++ +k+  + ++++e+ks+dl+ln+vs+D++t+PvPvCsCtG+ +qCYkWGnGGWqSaCCttt+S+yPLPv + +r+
  GSMUA_Achr1P03770_001 129 RRSKKVG----EDLNKQV-SLTKHHEWKSQDLGLNQVSFDDTTMPVPVCSCTGKYQQCYKWGNGGWQSACCTTTLSMYPLPVIPSKRH 211
                            2222222....2222222.355789*************************************************************** PP

              GAGA_bind 253 aRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                            aR+agrKmS++af+klL++LaaeGydls pvDLkdhWAkHGtn+++ti+
  GSMUA_Achr1P03770_001 212 ARVAGRKMSGSAFRKLLSRLAAEGYDLSLPVDLKDHWAKHGTNRYITIK 260
                            ************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.9E-101119IPR010409GAGA-binding transcriptional activator
SMARTSM012263.3E-1281260IPR010409GAGA-binding transcriptional activator
PfamPF062172.2E-78115260IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDDVGQRENG RHKTDQYRTA HAQWMLPQHQ LKENQTIKLL MAEREKALQE RDMAITEKKA  60
ALVERDMAYL QRDAAVAERN SAIIERDNAI GALEYARENG MSGNCATGKQ TRETPTNEAS  120
PDSGGSAPRR SKKVGEDLNK QVSLTKHHEW KSQDLGLNQV SFDDTTMPVP VCSCTGKYQQ  180
CYKWGNGGWQ SACCTTTLSM YPLPVIPSKR HARVAGRKMS GSAFRKLLSR LAAEGYDLSL  240
PVDLKDHWAK HGTNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389670.11e-180PREDICTED: barley B recombinant-like protein D isoform X1
RefseqXP_009389675.11e-180PREDICTED: barley B recombinant-like protein D isoform X1
RefseqXP_009389682.11e-180PREDICTED: barley B recombinant-like protein D isoform X1
RefseqXP_009389688.11e-180PREDICTED: barley B recombinant-like protein D isoform X1
RefseqXP_009389696.11e-180PREDICTED: barley B recombinant-like protein D isoform X3
RefseqXP_009389702.11e-180PREDICTED: barley B recombinant-like protein D isoform X3
RefseqXP_009389709.11e-180PREDICTED: barley B recombinant-like protein D isoform X3
RefseqXP_009389715.11e-180PREDICTED: barley B recombinant-like protein D isoform X3
RefseqXP_018677701.11e-180PREDICTED: barley B recombinant-like protein D isoform X1
RefseqXP_018677727.11e-180PREDICTED: barley B recombinant-like protein D isoform X2
SwissprotQ8S8C64e-96BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLM0RWT50.0M0RWT5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P03770_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.22e-98basic pentacysteine 4