PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P03860_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 180aa    MW: 19303.4 Da    PI: 5.0217
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P03860_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-171463155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + y+G+r+++  g+Wv+eIr+p++   ++r++lg++ tae+Aa a++ a+ +l+g
  GSMUA_Achr1P03860_001 14 PSYRGIRYRS--GKWVSEIREPRK---STRIWLGTYTTAEMAAVAYDVAAHALRG 63
                           57*****976..*********843...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.84E-271473No hitNo description
PfamPF008472.5E-101463IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-191573IPR016177DNA-binding domain
PROSITE profilePS5103219.7961571IPR001471AP2/ERF domain
SMARTSM003805.9E-291577IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-271572IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEPRVRAGAS RRHPSYRGIR YRSGKWVSEI REPRKSTRIW LGTYTTAEMA AVAYDVAAHA  60
LRGTDAQLNF PDQIASRPSP LSSSPTHIRV AAAEAAASLM PSSGAGDESD GAAAAAAAAV  120
DTVASQQQPG SYIDEEEIFD MPQLLVNMAE GMLMSPPRLS PHGSDDSPEV SEGESLWSYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-141676668ATERF1
3gcc_A4e-141676668ATERF1
5wx9_A8e-14873774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389544.11e-127PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ909e-47ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLM0RWU41e-126M0RWU4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P03860_0011e-127(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-38ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]