PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P03930_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 257aa MW: 27462.9 Da PI: 9.6454

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P03930_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.5e-38	24	83	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 kekal+cprC+stntkfCyynnysl+qPryfC CrryWt+GG+lrnvPvGgg+rknk++ GSMUA_Achr1P03930_001 24 KEKALDCPRCNSTNTKFCYYNNYSLTQPRYFCGDCRRYWTHGGSLRNVPVGGGSRKNKNK 83 68899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	12	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-32	26	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.509	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MAGNSICTAN RPQQAVERKV RLHKEKALDC PRCNSTNTKF CYYNNYSLTQ PRYFCGDCRR 60 YWTHGGSLRN VPVGGGSRKN KNKKLFSSSS TSSTTVSTLK KLTPAGLVSP PVSLSSTPGA 120 PKLYEGHDLN LAFPHHSPPE QHKFRSSESG RSRDGNSNSI DGRNTCTAVV ADSITELLRS 180 GIPARGLIAP FTPTVTMEYP CGPGLQDLGP PTLNLTLVGF NASVGGGSSS GHGSLQGLQK 240 CSCGKLLHHL EDSSANL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM950399	3e-92	AM950399.1 Musa acuminata subsp. burmannicoides microsatellite DNA, clone contig0051.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389460.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like isoform X2
Refseq	XP_018686763.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like isoform X1
Swissprot	Q9SXG8	4e-37	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	M0RWV1	0.0	M0RWV1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P03930_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	3e-33	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]