PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P03950_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 790aa MW: 86209.3 Da PI: 6.0064

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P03950_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.0004	559	596	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R++i +++ eLre++P+ a K s + L k+++++ Lq GSMUA_Achr1P03950_001 559 RQQIQDRLKELREIVPNgA------KCSIDALLDKTIKHMLFLQ 596 89***************66......8888889999999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.912	546	595	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-5	559	601	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00511	559	596	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.7E-4	559	600	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence Send to blast
MESVTGHFQC IDTHEEVEFH DQHGAFGFTS SSGDAYSCYQ NTNTIHEAYR EQLNNTNTLG 60 GRAMAPHLFS LESYHGSSSH KSKMSPFAVE TPVTCSTGDS RDFCNSFQNT FFMSRNSSFD 120 LTEQQNAAAV QAQVQVTPNT KFLSISHHPE NSGVTYLKTV NCSSNIFNMP MMEHGLSSGM 180 QNHLVLTNSN LPFHFMNILH KFCADSPSSS KFALHDSIPK ARSSNVVKAC IYGAEKLPLP 240 LGALYGGKPS GLFSSFASEH LNDFVTDPSD LTPENPLLCH PKDALVASHC HQQSEHVIDD 300 VTTQMNENLL GARSIPAGPT GYSLINGSSG KQVESSISAA VNSLVLENDK EKSSLSPVQP 360 LSDNDLFDGM QLDMRPKDFV HELWDDNTGH NSCSNMSADS DCISVTEMGL RPRGDKGLFS 420 ESSLQQLLDA IVGDHLNKAS SHGSAAKYVH AISGPNLENQ FSTSLVGPSV YSNLVPSIGV 480 PTINGTSGVL LPYCNSEIGH GSPKQELSNT TICSWIDDSC SMNTENSVLN QPKKPEEAAK 540 VVKKRARPGE STRPRPKDRQ QIQDRLKELR EIVPNGAKCS IDALLDKTIK HMLFLQSVTK 600 YADKLKQADE PKIIGEESGV VLKDNSGGVG GGGATWAYEV AGQTMVCPII VEDLTPPGQM 660 LVEMVCEDRG LFLEIADIIR GFGLIILKGI MEIRERKIWA RFLVEANREV TRMDIFLSLI 720 QLLQQNSCLR SGDLANKVMD KGAPVFPGYH QSPIVSSISN LTCLNDGIGC YNVLDAVYRL 780 IVILLSRIKL

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence Send to blast

MESVTGHFQC IDTHEEVEFH DQHGAFGFTS SSGDAYSCYQ NTNTIHEAYR EQLNNTNTLG  60
GRAMAPHLFS LESYHGSSSH KSKMSPFAVE TPVTCSTGDS RDFCNSFQNT FFMSRNSSFD  120
LTEQQNAAAV QAQVQVTPNT KFLSISHHPE NSGVTYLKTV NCSSNIFNMP MMEHGLSSGM  180
QNHLVLTNSN LPFHFMNILH KFCADSPSSS KFALHDSIPK ARSSNVVKAC IYGAEKLPLP  240
LGALYGGKPS GLFSSFASEH LNDFVTDPSD LTPENPLLCH PKDALVASHC HQQSEHVIDD  300
VTTQMNENLL GARSIPAGPT GYSLINGSSG KQVESSISAA VNSLVLENDK EKSSLSPVQP  360
LSDNDLFDGM QLDMRPKDFV HELWDDNTGH NSCSNMSADS DCISVTEMGL RPRGDKGLFS  420
ESSLQQLLDA IVGDHLNKAS SHGSAAKYVH AISGPNLENQ FSTSLVGPSV YSNLVPSIGV  480
PTINGTSGVL LPYCNSEIGH GSPKQELSNT TICSWIDDSC SMNTENSVLN QPKKPEEAAK  540
VVKKRARPGE STRPRPKDRQ QIQDRLKELR EIVPNGAKCS IDALLDKTIK HMLFLQSVTK  600
YADKLKQADE PKIIGEESGV VLKDNSGGVG GGGATWAYEV AGQTMVCPII VEDLTPPGQM  660
LVEMVCEDRG LFLEIADIIR GFGLIILKGI MEIRERKIWA RFLVEANREV TRMDIFLSLI  720
QLLQQNSCLR SGDLANKVMD KGAPVFPGYH QSPIVSSISN LTCLNDGIGC YNVLDAVYRL  780
IVILLSRIKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389431.1	0.0	PREDICTED: transcription factor LHW-like isoform X1
TrEMBL	M0RWV3	0.0	M0RWV3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P03950_001	0.0	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	5e-49	conserved peptide upstream open reading frame 7