PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P04100_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Trihelix

Protein Properties

Length: 641aa MW: 70564.3 Da PI: 7.8337

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P04100_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.2	5.2e-24	85	229	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................................................. 38 rW++qe+ aL+++r+em+ +r++ lk+plWeevs+ + GSMUA_Achr1P04100_001 85 RWPRQETVALLKIRSEMDAVFRDATLKGPLWEEVSRPLlimttascflpfpsqlysrwggvhncniiglrcfvrlsrynvimiisffl 172 8************************************************************************************* PP trihelix 39 ..........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +e g++rs+k+Ckek+en++k+yk++k+g+ +r++++s +++f+qlea GSMUA_Achr1P04100_001 173 rpfafsllklAELGYKRSAKKCKEKFENVHKYYKRTKDGRAGRQDGKS--YRFFSQLEA 229 **************************************866665..*****85 PP
2	trihelix	107	1.2e-33	391	475	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r+ +e++++++ k+plWee+s++m++ g++r +k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+ql+ GSMUA_Achr1P04100_001 391 RWPKAEVHALIKIRSALESKFQDAGPKGPLWEEISARMQQLGYNRRAKRCKEKWENINKYFKKVKESNKLR-PEDSKTCPYFHQLD 475 8******************************************************************98.99********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.495	78	138	IPR017877	Myb-like domain
CDD	cd12203	4.35E-19	84	209	No hit	No description
Pfam	PF13837	1.7E-9	181	230	No hit	No description
PROSITE profile	PS50090	7.062	384	448	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	9.6E-4	390	447	IPR009057	Homeodomain-like
CDD	cd12203	1.75E-30	390	455	No hit	No description
Pfam	PF13837	1.8E-22	390	476	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MAPFSTSAVG PGAPLLGIPG PDPLQQQQPL AETASPISSR PPPAGSAPSA DFDELVPAVT 60 GNFPDDVVLA AGDDAERGTG ATANRWPRQE TVALLKIRSE MDAVFRDATL KGPLWEEVSR 120 PLLIMTTASC FLPFPSQLYS RWGGVHNCNI IGLRCFVRLS RYNVIMIISF FLRPFAFSLL 180 KLAELGYKRS AKKCKEKFEN VHKYYKRTKD GRAGRQDGKS YRFFSQLEAL HSGSAAAFPP 240 PAMTPPLGGL QGISSLATGG AAAAAMGISF SSNSSSSRKM MAFFDRLMRQ VMERQEVMQQ 300 RFLEAIEKRE QDRMIRDEAW RRQEMARLNR EQEVLAQERA MAASRDTAII SYLQKISGQT 360 FRQKPVQPLP QKHEDAVGRA SLQEAMSSSS RWPKAEVHAL IKIRSALESK FQDAGPKGPL 420 WEEISARMQQ LGYNRRAKRC KEKWENINKY FKKVKESNKL RPEDSKTCPY FHQLDTLYRN 480 RLLGSSSGSG SGSTAGIQGQ QGHETNPPSK VESNNGKSSS DNNQNGGNSE GGEGPGGSEV 540 PTSNGELSPS FFDVGLKKPE DIVKELMGEP PQQSVMDDYE KLDEADSINL DQDDDEDDDD 600 DDEARKMQYK IQFQRQNVTA GGGGNESAAA ATAGSFLAIV Q

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MAPFSTSAVG PGAPLLGIPG PDPLQQQQPL AETASPISSR PPPAGSAPSA DFDELVPAVT  60
GNFPDDVVLA AGDDAERGTG ATANRWPRQE TVALLKIRSE MDAVFRDATL KGPLWEEVSR  120
PLLIMTTASC FLPFPSQLYS RWGGVHNCNI IGLRCFVRLS RYNVIMIISF FLRPFAFSLL  180
KLAELGYKRS AKKCKEKFEN VHKYYKRTKD GRAGRQDGKS YRFFSQLEAL HSGSAAAFPP  240
PAMTPPLGGL QGISSLATGG AAAAAMGISF SSNSSSSRKM MAFFDRLMRQ VMERQEVMQQ  300
RFLEAIEKRE QDRMIRDEAW RRQEMARLNR EQEVLAQERA MAASRDTAII SYLQKISGQT  360
FRQKPVQPLP QKHEDAVGRA SLQEAMSSSS RWPKAEVHAL IKIRSALESK FQDAGPKGPL  420
WEEISARMQQ LGYNRRAKRC KEKWENINKY FKKVKESNKL RPEDSKTCPY FHQLDTLYRN  480
RLLGSSSGSG SGSTAGIQGQ QGHETNPPSK VESNNGKSSS DNNQNGGNSE GGEGPGGSEV  540
PTSNGELSPS FFDVGLKKPE DIVKELMGEP PQQSVMDDYE KLDEADSINL DQDDDEDDDD  600
DDEARKMQYK IQFQRQNVTA GGGGNESAAA ATAGSFLAIV Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	195	KRSAKKCKE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111742	1e-53	AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence.
GenBank	AP004839	1e-53	AP004839.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519A12.
GenBank	AP004868	1e-53	AP004868.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0048B08.
GenBank	AP014958	1e-53	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-53	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389196.1	0.0	PREDICTED: trihelix transcription factor GTL1-like isoform X1
Swissprot	Q39117	1e-68	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	M0RWW8	0.0	M0RWW8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P04100_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-75	Trihelix family protein