PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P04350_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 228aa    MW: 24625.4 Da    PI: 6.7698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P04350_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-1968116355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr ++ +grWv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  GSMUA_Achr1P04350_001  68 YRGVRMRS-WGRWVSEIREPKK---KSRIWLGTFPTAEMAARAHDVAALAIKG 116
                            9****998.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-3867130IPR001471AP2/ERF domain
PfamPF008471.8E-1267116IPR001471AP2/ERF domain
PROSITE profilePS5103223.43367124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-3267125IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2168125IPR016177DNA-binding domain
CDDcd000182.68E-3268126No hitNo description
PRINTSPR003671.6E-106879IPR001471AP2/ERF domain
PRINTSPR003671.6E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MKEPLTQDCE ANNYSSSSPS HTKTSPASCC CSSPSTDAAT GVSKRKARKA GGEETEKPGN  60
DGKQHASYRG VRMRSWGRWV SEIREPKKKS RIWLGTFPTA EMAARAHDVA ALAIKGQSAY  120
LNFPELASRL PRPATAKPKD IQAAASLAAA TAFDDHTPSP CPTQTELPLS HSPAPTTPPS  180
DDHGALFDLP DLLLDLREGF CYSSSWAPST ADDGVEFRVE EPFLWGYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1862124972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391523.21e-168PREDICTED: ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ72e-54ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLM0RWZ31e-166M0RWZ3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P04350_0011e-167(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]