PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P04910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 243aa    MW: 26978.3 Da    PI: 8.068
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P04910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.4e-131462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W++eEd  l+ +++ +G   +W + +++ g++R++k+c++rw++yl
  GSMUA_Achr1P04910_001 14 RGPWSPEEDAALKSYIQCHGAVgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                           89******************879************************97 PP
2Myb_DNA-binding48.61.8e-1569111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +T+eEd ++  + ++lG++ W+ Ia++++ gRt++++k++w++
  GSMUA_Achr1P04910_001  69 GGFTEEEDSIICTLYHRLGSR-WSVIASHLP-GRTDNDVKNYWNT 111
                            569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.696962IPR017930Myb domain
SuperFamilySSF466895.99E-2712109IPR009057Homeodomain-like
SMARTSM007171.0E-81364IPR001005SANT/Myb domain
PfamPF002498.7E-121462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-241569IPR009057Homeodomain-like
CDDcd001679.87E-81662No hitNo description
PROSITE profilePS5129422.12963117IPR017930Myb domain
SMARTSM007172.9E-1467115IPR001005SANT/Myb domain
PfamPF002494.8E-1469111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2470117IPR009057Homeodomain-like
CDDcd001671.10E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRAPCCDKA KVKRGPWSPE EDAALKSYIQ CHGAVGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDSIIC TLYHRLGSRW SVIASHLPGR TDNDVKNYWN TKLKKKLMAR  120
RPCLPTTTTS DSKSPPLIGM PLHPNDGLSQ QSKKLYSDEE VSASSSSITA QHSSSFLNWS  180
TGGAESSDLF LSELGFGDAG DFLSSYGYQE RLGEEIPSYF SDPSQGMYQS LTYSLQSHAI  240
HEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25141174105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-25141174105C-Myb DNA-Binding Domain
1msf_C1e-25141174105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387448.10.0PREDICTED: transcription factor RAX2
SwissprotQ9M2Y93e-69RAX3_ARATH; Transcription factor RAX3
TrEMBLM0RX490.0M0RX49_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P04910_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.19e-71myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]