PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P05940_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 528aa    MW: 58009.8 Da    PI: 8.4286
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P05940_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2982.4e-911635271374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                            lv++L+++Ae++++g++  a+ +Larl+++  sp g+p+ R a+yf+eAL+   ++ +++     +   +++ ++  +l a+k+fs+v
  GSMUA_Achr1P05940_001 163 LVDQLFKAAEVLEAGNTVSARGILARLNHQfPSPVGKPFLRSAFYFKEALHLLASH-SPHPHPPPSLPISTPLDVMLKLGAYKTFSDV 249
                            6899**************************9*******************988877.444443334444444579999********** PP

                   GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAee 171
                            sPi++f+ +t+ q +lea++g++r+HiiDfdi+ G+QW a++q+La+R     + +p l+iT+++s+ s+++ el+ ++++L++fA++
  GSMUA_Achr1P05940_001 250 SPIVQFASFTCIQPLLEALDGASRIHIIDFDIGVGMQWSAFMQELAQRWsssmATAPFLKITAFASAYSHHSLELNLIHQNLSHFASS 337
                            ************************************************96555669**********9999****************** PP

                   GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                            l++pfefnvl  + ++   l ++    +Ea+aVnl +     +        +++++L++vk+lsPk+vv v+  +d+ + +F++++l+
  GSMUA_Achr1P05940_001 338 LNIPFEFNVLSLDPFDPTVLFRMCSAMDEAVAVNLPIGSAIRP--------PIPTLLRFVKQLSPKIVVSVDYGCDRIDLPFAHHILH 417
                            **********77788887777877777**********888777........6788********************************* PP

                   GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                            a++ +++l+ds++a  ++++++++k+Er+l++++i+++v  ++        +   Wr  + +aGF  v++s+++++qa++ll++v ++
  GSMUA_Achr1P05940_001 418 AFQSCTVLLDSIDAA-GANQDAANKIERFLVRPRIESAVLGRHHL----SDKTLPWRTLFASAGFMHVQFSNFTETQAECLLKRVLVR 500
                            ************998.8999*******************998887....777889********************************* PP

                   GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                            g++ve+++ sl l+W++ +LvsvSaW+
  GSMUA_Achr1P05940_001 501 GFHVEKRQSSLSLCWQRGELVSVSAWK 527
                            **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.411137507IPR005202Transcription factor GRAS
PfamPF035148.4E-89163527IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MASSVLSAGV LGSKGATFGC TPSLAPRPAN SLPLSLPPLP PGVISQESTE EKPLFGSSLF  60
FAHQQQAQPP QRSSFFLPLN HFAGYHEGQP LEHLAPPPRK RPAIDPLPSS HVPDLFLRRN  120
QPQQLGLPQQ FNTAAFQLQP APGKPKLANG DEASVAARQQ RELVDQLFKA AEVLEAGNTV  180
SARGILARLN HQFPSPVGKP FLRSAFYFKE ALHLLASHSP HPHPPPSLPI STPLDVMLKL  240
GAYKTFSDVS PIVQFASFTC IQPLLEALDG ASRIHIIDFD IGVGMQWSAF MQELAQRWSS  300
SMATAPFLKI TAFASAYSHH SLELNLIHQN LSHFASSLNI PFEFNVLSLD PFDPTVLFRM  360
CSAMDEAVAV NLPIGSAIRP PIPTLLRFVK QLSPKIVVSV DYGCDRIDLP FAHHILHAFQ  420
SCTVLLDSID AAGANQDAAN KIERFLVRPR IESAVLGRHH LSDKTLPWRT LFASAGFMHV  480
QFSNFTETQA ECLLKRVLVR GFHVEKRQSS LSLCWQRGEL VSVSAWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2719552734375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418194.10.0PREDICTED: scarecrow-like protein 6
TrEMBLM0RXF20.0M0RXF2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P05940_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-109GRAS family protein