PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P06280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 413aa    MW: 46077.3 Da    PI: 9.8332
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P06280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.3e-32237290255
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GSMUA_Achr1P06280_001 237 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 290
                            9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15234291IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28235291IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-23237290IPR006447Myb domain, plants
PfamPF002492.8E-7238289IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAIRISKFQV YPQIHARRRR SSHKLKSFVP KEVICCCCCK KKKKKKRSEV LEQKLMELFP  60
AQPDLSLQIS PPNTTQASAW RKADENMDLG FWSSSSSYNN RKSITGPCTA MAGETAFGLS  120
LASPGATDCS SARDSLLLRP HPHYQHHHLH FHHHHHPLLQ EAGFREDLGV LKPIRGIPVY  180
QHKPSFPLVP LHQQQQQQQP CDSSSTSNFS PFAATQGLSR SRFLPTRFPG KRSMRAPRMR  240
WTTTLHARFV HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKNTDKPAVS  300
SGQSDGFENG STGEICDDNS PDNPDQRGPG STAAKMMQHG VGLWSNSSRG GCFTGTPGES  360
TAGSMHFCFL FSFLQKDLRS KSLEMYSDMN SSCLSETLSS SMPNLEFTLG RSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16238292458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16238292458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16238292357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16238292357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16238292357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16238292357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16238292458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16238292458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16238292458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16238292458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16238292458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16238292458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046KKKKKKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395186.10.0PREDICTED: probable transcription factor KAN2
TrEMBLM0RXI60.0M0RXI6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P06280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.13e-57G2-like family protein