PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P07110_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 486aa MW: 52446.1 Da PI: 9.7159

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P07110_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H GSMUA_Achr1P07110_001 112 FICEVCNKGFQREQNLQLHRRGH 134 89*******************88 PP
2	zf-C2H2	11.9	0.00069	188	210	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + GSMUA_Achr1P07110_001 188 WKCDKCSKRYAVQSDWKAHSKIC 210 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.18E-7	111	134	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.2E-6	111	134	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.99	112	134	IPR007087	Zinc finger, C2H2
Pfam	PF12171	2.3E-5	112	134	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0052	112	134	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	114	134	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.1E-4	176	209	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.18E-7	183	208	No hit	No description
SMART	SM00355	140	188	208	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MKAASSSTHF FGIREDGQHS HQQPQQPPQP PPPQELPATA SSANTPHSAA PPKKRRNLPG 60 NPSKYLSLFS FTSFLCSLSL NLGLYMRSIM ITDPDAEVIA LSPKTLMATN RFICEVCNKG 120 FQREQNLQLH RRGHNLPWKL KQKNPNEVRR RVYLCPEPTC VHHDPSRALG DLTGIKKHFC 180 RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC GTREYRCDCG TLFSRRDSFI THRAFCDALA 240 QESARLPGGI NTIGSHLYGG RGMNLGLPQL SSLQDQAQPS ADLLQLRGSS GTGHNAGGGT 300 EAMSLFAGDL MSNHTDTTMS SLYNPSVHAE SVVPQMSATA LLQKAAQMGA TSSGGSGSSM 360 LRGLTASFSG GGGGEISRTG VGNENHFQDI MNSLANGNGG VFGGFNQGLD GMGENKLHRN 420 LSMGGFGGSD RLTRDFLGVG GMMRSMVGGI PQREQHHLGI DTTSSMDHSE MKSGSSTRSF 480 GGGRLQ

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MKAASSSTHF FGIREDGQHS HQQPQQPPQP PPPQELPATA SSANTPHSAA PPKKRRNLPG  60
NPSKYLSLFS FTSFLCSLSL NLGLYMRSIM ITDPDAEVIA LSPKTLMATN RFICEVCNKG  120
FQREQNLQLH RRGHNLPWKL KQKNPNEVRR RVYLCPEPTC VHHDPSRALG DLTGIKKHFC  180
RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC GTREYRCDCG TLFSRRDSFI THRAFCDALA  240
QESARLPGGI NTIGSHLYGG RGMNLGLPQL SSLQDQAQPS ADLLQLRGSS GTGHNAGGGT  300
EAMSLFAGDL MSNHTDTTMS SLYNPSVHAE SVVPQMSATA LLQKAAQMGA TSSGGSGSSM  360
LRGLTASFSG GGGGEISRTG VGNENHFQDI MNSLANGNGG VFGGFNQGLD GMGENKLHRN  420
LSMGGFGGSD RLTRDFLGVG GMMRSMVGGI PQREQHHLGI DTTSSMDHSE MKSGSSTRSF  480
GGGRLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	184	246	3	65	Zinc finger protein JACKDAW
5b3h_F	2e-34	184	246	3	65	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00142	DAP	Transfer from AT1G14580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374308	1e-175	AK374308.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3060C18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009394230.1	1e-177	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_009394238.1	1e-177	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_009394246.1	1e-177	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q8RWX7	1e-110	IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBL	M0RXR9	0.0	M0RXR9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P07110_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-109	indeterminate(ID)-domain 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938]