PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P07550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 237aa    MW: 27755.8 Da    PI: 10.1562
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P07550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.3e-175198148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEde+l+  ++ +G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr1P07550_001 51 KGAWTKEEDERLIAHIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 98
                           79******************************99************97 PP
2Myb_DNA-binding61.32e-19104148147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg++T++Edel+++++ +lG++ W++Ia++++ gRt++++k++w+++
  GSMUA_Achr1P07550_001 104 RGNFTEDEDELIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNHWNTH 148
                            89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-2442101IPR009057Homeodomain-like
PROSITE profilePS5129416.6444698IPR017930Myb domain
SuperFamilySSF466891.41E-2950145IPR009057Homeodomain-like
SMARTSM007172.0E-1350100IPR001005SANT/Myb domain
PfamPF002491.2E-145198IPR001005SANT/Myb domain
CDDcd001675.41E-105398No hitNo description
PROSITE profilePS5129430.18899153IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-28102153IPR009057Homeodomain-like
SMARTSM007174.1E-18103151IPR001005SANT/Myb domain
PfamPF002491.1E-17104148IPR001005SANT/Myb domain
CDDcd001671.38E-12106149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSTKYTKVMD VFNVRERERE REREREKRER EEARGRNMGR SPCCEKAHTN KGAWTKEEDE  60
RLIAHIRAHG EGCWRSLPKA AGLLRCGKSC RLRWINYLRP DLKRGNFTED EDELIIKLHS  120
LLGNKWSLIA ARLPGRTDNE IKNHWNTHIR RKLLSRGVDP ATHRPSSVWQ QQTQRPDLNL  180
ELCISLPFQQ DPHELTKREK SLCFSCSLGL QNSKECKCRD FSGLSNGMLS YRGLKMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-315015326128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11426REREREREREREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393912.11e-142PREDICTED: myb-related protein Hv1-like
SwissprotP200252e-98MYB38_MAIZE; Myb-related protein Zm38
TrEMBLM0RXW31e-174M0RXW3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P07550_0011e-175(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-88myb domain protein 7
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]