PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P07740_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family DBB
Protein Properties Length: 392aa    MW: 43052.4 Da    PI: 5.376
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P07740_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.74.9e-08445540
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                            C+ ++e+e++ fC  ++  lC  C    H+       H++ 
  GSMUA_Achr1P07740_001  4 LCDVCGEEEASVFCCADEAALCGACDRRVHRAnkvagkHRRL 45
                           6*****************************767888888776 PP
2zf-B_box248e-085590337
               zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.H 37
                            + C+ ++ek+  lfC++++  lC+dC  + H+  H
  GSMUA_Achr1P07740_001 55 RPACDICQEKRGYLFCHEDRAILCRDCDASVHSAsH 90
                           578*****************************6575 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.552147IPR000315B-box-type zinc finger
CDDcd000211.06E-8347No hitNo description
SMARTSM003362.7E-10447IPR000315B-box-type zinc finger
PfamPF006431.3E-6446IPR000315B-box-type zinc finger
SMARTSM003368.4E-1353100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.25353100IPR000315B-box-type zinc finger
CDDcd000214.33E-956100No hitNo description
PfamPF006431.5E-65690IPR000315B-box-type zinc finger
PfamPF044241.2E-23280384IPR007518Protein of unknown function DUF544
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MRILCDVCGE EEASVFCCAD EAALCGACDR RVHRANKVAG KHRRLSLSDS SAQSRPACDI  60
CQEKRGYLFC HEDRAILCRD CDASVHSASH LTMKHNRFLL TGARLSAAPI PCSPSPESEE  120
AADKATTKNT VTTADQTKAS VADGSSPIAS TSAATPTTAT SSISEYLINM CPGWRVEDLL  180
VDDAAVVAME DFSKGDDLPP FLGADLEAVA EKFPVWAPQV PQFPPPATPA AATTTARYQP  240
WNTSKEAGRE RWSEDLFAVP QISPASTPSK RPRHTPWNHL NLSLDVSEIS LQKLLSLVAE  300
RLIDPNCNVQ DDGHVNNRQQ NISEAIDLLS RLAAGIDVNV HFRKINDFEF TQEYTIFNLL  360
DIGLHHGWIV DPQVTLCDHL IHLSFWHSLY PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5jkn_A2e-1428937366150Protein FAM63A
5jqs_A2e-1428937366150Protein FAM63A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393714.10.0PREDICTED: B-box zinc finger protein 20-like
TrEMBLM0RXY20.0M0RXY2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P07740_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.15e-43salt tolerance homolog2