PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P07770_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family DBB
Protein Properties Length: 242aa    MW: 27237 Da    PI: 6.3785
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P07770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.2e-08333434
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                           ++C+ +e+ +++lfC  ++  lC+ C ++ H
  GSMUA_Achr1P07770_001  3 TICDVCESAPAILFCAADEAALCRPCDEKVH 33
                           68**************************998 PP
2zf-B_box26.99.7e-095292238
               zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                           e + C+ +e+ ++ ++Ce +++ lC +C ++ H g    H+
  GSMUA_Achr1P07770_001 52 EVPHCDICENAPAFFYCEIDGSSLCLQCDMAVHVGgkrtHR 92
                           6789*****************************66666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.6E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.068147IPR000315B-box-type zinc finger
CDDcd000219.74E-7345No hitNo description
PfamPF006434.0E-6341IPR000315B-box-type zinc finger
SMARTSM003363.3E-135196IPR000315B-box-type zinc finger
PROSITE profilePS501199.4715196IPR000315B-box-type zinc finger
PfamPF006432.6E-65292IPR000315B-box-type zinc finger
CDDcd000211.82E-75493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRTICDVCES APAILFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP SEVPHCDICE  60
NAPAFFYCEI DGSSLCLQCD MAVHVGGKRT HRRYLLLRQR VEFPGSRSSH MEELKTKAKD  120
FDEHRRDHKM VMTEKMTNRK LSADPALDAT NNHDGKMDSN MIDLNTRPVR IHEQASNTQA  180
QQMDLASDNN HDSPGVVPTG PFQNSGSSIC INVTYHHFTC TTQIILQVLG LEFFEIFCMH  240
IE
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393660.11e-153PREDICTED: B-box zinc finger protein 18
SwissprotC0SVM53e-80BBX19_ARATH; B-box zinc finger protein 19
TrEMBLM0RXY50.0M0RXY5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P07770_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-82DBB family protein