PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P08440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 187aa    MW: 20816.9 Da    PI: 9.9132
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P08440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.11.9e-4174151178
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            +Cq+e+C+adl+eak+yhrrhkvCe+hska+vv+v+g +qrfCqqCsrfhel efD++krsCrrrLa+hnerrrk+++
  GSMUA_Achr1P08440_001  74 CCQAENCTADLTEAKRYHRRHKVCEAHSKAAVVMVAGFRQRFCQQCSRFHELAEFDDSKRSCRRRLAGHNERRRKSSS 151
                            6**************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-3467136IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.372149IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-3873153IPR004333Transcription factor, SBP-box
PfamPF031108.6E-3275148IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEHRRPSTEP SRKSTKEKTR KDTAVATGND EDEEEQEEAA AEADKKRRPP SSSSSAARRG  60
VSGGGGGGGA PQPCCQAENC TADLTEAKRY HRRHKVCEAH SKAAVVMVAG FRQRFCQQCS  120
RFHELAEFDD SKRSCRRRLA GHNERRRKSS SDAQAGEGSN RCRQADQDGR MQISLPGKPT  180
YKHFQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-3765148184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392815.11e-135PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ6Z4619e-43SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLM0RY521e-133M0RY52_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P08440_0011e-134(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.21e-43squamosa promoter binding protein-like 4