PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P08590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 417aa    MW: 45996.6 Da    PI: 9.5225
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P08590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-05181203223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +C++Cg+ F  ++ L++H  + H
  GSMUA_Achr1P08590_001 181 TCHKCGEQFGKQEALESHHLSkH 203
                            7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.829180208IPR007087Zinc finger, C2H2
PROSITE patternPS000280182203IPR007087Zinc finger, C2H2
SuperFamilySSF563997.48E-24205416No hitNo description
Gene3DG3DSA:3.90.228.103.2E-11208393IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MLPHQPWGFQ DRKGSRDMTE RSCGAPKQKK ESRAEERMPT VWFALKKSLH CKTEPSDVHD  60
PKARGHLGAI LTRRPGRSGC SRSIANLKDV IHGSKRHLER PPSCSPRSIG SSEFLNPITH  120
EVILSNSRCE LRITGFGGCP DANNTPPRKP PTLLGGRDGH GIVGSSLSTD SQTKRHSAAV  180
TCHKCGEQFG KQEALESHHL SKHAVTELVE GDSSRKIVEI ICRASWLKPE SSCIRIERVL  240
KVHNMQKTLS RFEEYRELVK NKASKLAKKH PRCLADGNEL LRFHGTTMAC SLGTNGSSSL  300
CSSEKCNVCR IIRHGFSAKK EVKGGIGVFT TSTSGRAFET IETYDDDDGD PSIKKALLVC  360
RVIAGRVHKP LDNYQELAGH SGFDSMAGKV GLYANIEELY LLNPRALLPC FVVICRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392663.10.0PREDICTED: uncharacterized protein LOC103978555 isoform X1
RefseqXP_009392672.10.0PREDICTED: uncharacterized protein LOC103978555 isoform X1
TrEMBLM0RY670.0M0RY67_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P08590_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-170C2H2 family protein