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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GSMUA_Achr1P09360_001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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| Family | GRAS | ||||||||
| Protein Properties | Length: 369aa MW: 40849 Da PI: 7.1664 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 65 | 1.5e-20 | 33 | 127 | 2 | 107 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89
++lL++cA+ v+ gdl +a+++++ ls asp gd+++Rl+ f +AL+ r+ r ++ps++s + +++ f+++sP
GSMUA_Achr1P09360_001 33 RQLLISCADLVHRGDLPAADRAISILSAAASPCGDSTERLIRQFCRALSVRVGR--------VSPSAES---LGSLRSSYLSFNQISP 109
79****************************************************........5566555...6666678889****** PP
GRAS 90 ilkfshltaNqaIleave 107
+l+fshlt NqaIlea+
GSMUA_Achr1P09360_001 110 FLRFSHLTPNQAILEAAI 127
***************975 PP
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| 2 | GRAS | 253.4 | 8.8e-78 | 126 | 369 | 131 | 374 |
GRAS 131 aLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrledleleeLrvkpgEalaVnlvlqlhrl 213
a+a+R+ ++pp +RiTg gs + e l++tg+rL++fA++lg+ f+f++l +++ +++++ +r++pgE+l+Vn+vl lh+l
GSMUA_Achr1P09360_001 126 AIAERSdpSDPPFIRITGTGS----NLEVLRRTGHRLQNFAHSLGLGFQFHPLllhPTSTSLNFTPSPFRLHPGETLVVNCVLFLHKL 209
7899987788***********....99**************************5432335556799********************** PP
GRAS 214 ldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
+e ++ + +++L++++ ++P vv+v+e+ea+hns++F++rf+eal+yy+a+f+slea+lp++s+er vE+++lg+ei+ +v
GSMUA_Achr1P09360_001 210 QKEGGNEDGsrDLQAFLRTIRAMNPSVVTVAEREASHNSPNFMQRFVEALDYYMAVFESLEATLPPTSQERLAVEQVWLGQEIEGIVG 297
*99988887445679************************************************************************* PP
GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
eg he+ e+W++ l++aGF++v+ls++a++qa+lllr ++ s+gy+ve ++sl+lgW++r L+svS+Wr
GSMUA_Achr1P09360_001 298 GEGGG----HERSERWENVLRDAGFSSVQLSNFAVSQARLLLRLHYpSEGYQVELVRDSLFLGWQNRHLFSVSSWR 369
****9....9*****************************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 35.761 | 6 | 348 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 3.0E-75 | 126 | 369 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 369 aa Download sequence Send to blast |
MSDGGGARET HPHPSHHHPS PQNGLISSTI HARQLLISCA DLVHRGDLPA ADRAISILSA 60 AASPCGDSTE RLIRQFCRAL SVRVGRVSPS AESLGSLRSS YLSFNQISPF LRFSHLTPNQ 120 AILEAAIAER SDPSDPPFIR ITGTGSNLEV LRRTGHRLQN FAHSLGLGFQ FHPLLLHPTS 180 TSLNFTPSPF RLHPGETLVV NCVLFLHKLQ KEGGNEDGSR DLQAFLRTIR AMNPSVVTVA 240 EREASHNSPN FMQRFVEALD YYMAVFESLE ATLPPTSQER LAVEQVWLGQ EIEGIVGGEG 300 GGHERSERWE NVLRDAGFSS VQLSNFAVSQ ARLLLRLHYP SEGYQVELVR DSLFLGWQNR 360 HLFSVSSWR |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 3e-47 | 39 | 368 | 26 | 378 | Protein SCARECROW |
| 5b3h_A | 3e-47 | 39 | 368 | 25 | 377 | Protein SCARECROW |
| 5b3h_D | 3e-47 | 39 | 368 | 25 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009395940.1 | 0.0 | PREDICTED: protein MONOCULM 1-like | ||||
| Refseq | XP_018683568.1 | 0.0 | PREDICTED: protein MONOCULM 1-like | ||||
| Swissprot | Q9ZWC5 | 2e-87 | SCL18_ARATH; Scarecrow-like protein 18 | ||||
| TrEMBL | M0RYE5 | 0.0 | M0RYE5_MUSAM; Uncharacterized protein | ||||
| STRING | GSMUA_Achr1P09360_001 | 0.0 | (Musa acuminata) | ||||
| Orthologous Group ? help Back to Top | |||
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| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP3653 | 34 | 79 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT1G55580.1 | 2e-79 | GRAS family protein | ||||
| Publications ? help Back to Top | |||
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