PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P09360_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 369aa    MW: 40849 Da    PI: 7.1664
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P09360_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS651.5e-20331272107
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++lL++cA+ v+ gdl +a+++++ ls  asp gd+++Rl+  f +AL+ r+ r        ++ps++s     +  +++  f+++sP
  GSMUA_Achr1P09360_001  33 RQLLISCADLVHRGDLPAADRAISILSAAASPCGDSTERLIRQFCRALSVRVGR--------VSPSAES---LGSLRSSYLSFNQISP 109
                            79****************************************************........5566555...6666678889****** PP

                   GRAS  90 ilkfshltaNqaIleave 107
                            +l+fshlt NqaIlea+ 
  GSMUA_Achr1P09360_001 110 FLRFSHLTPNQAILEAAI 127
                            ***************975 PP

2GRAS253.48.8e-78126369131374
                   GRAS 131 aLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrledleleeLrvkpgEalaVnlvlqlhrl 213
                            a+a+R+  ++pp +RiTg gs    + e l++tg+rL++fA++lg+ f+f++l    +++  +++++ +r++pgE+l+Vn+vl lh+l
  GSMUA_Achr1P09360_001 126 AIAERSdpSDPPFIRITGTGS----NLEVLRRTGHRLQNFAHSLGLGFQFHPLllhPTSTSLNFTPSPFRLHPGETLVVNCVLFLHKL 209
                            7899987788***********....99**************************5432335556799********************** PP

                   GRAS 214 ldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                             +e ++ +     +++L++++ ++P vv+v+e+ea+hns++F++rf+eal+yy+a+f+slea+lp++s+er  vE+++lg+ei+ +v 
  GSMUA_Achr1P09360_001 210 QKEGGNEDGsrDLQAFLRTIRAMNPSVVTVAEREASHNSPNFMQRFVEALDYYMAVFESLEATLPPTSQERLAVEQVWLGQEIEGIVG 297
                            *99988887445679************************************************************************* PP

                   GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             eg      he+ e+W++ l++aGF++v+ls++a++qa+lllr ++ s+gy+ve  ++sl+lgW++r L+svS+Wr
  GSMUA_Achr1P09360_001 298 GEGGG----HERSERWENVLRDAGFSSVQLSNFAVSQARLLLRLHYpSEGYQVELVRDSLFLGWQNRHLFSVSSWR 369
                            ****9....9*****************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.7616348IPR005202Transcription factor GRAS
PfamPF035143.0E-75126369IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSDGGGARET HPHPSHHHPS PQNGLISSTI HARQLLISCA DLVHRGDLPA ADRAISILSA  60
AASPCGDSTE RLIRQFCRAL SVRVGRVSPS AESLGSLRSS YLSFNQISPF LRFSHLTPNQ  120
AILEAAIAER SDPSDPPFIR ITGTGSNLEV LRRTGHRLQN FAHSLGLGFQ FHPLLLHPTS  180
TSLNFTPSPF RLHPGETLVV NCVLFLHKLQ KEGGNEDGSR DLQAFLRTIR AMNPSVVTVA  240
EREASHNSPN FMQRFVEALD YYMAVFESLE ATLPPTSQER LAVEQVWLGQ EIEGIVGGEG  300
GGHERSERWE NVLRDAGFSS VQLSNFAVSQ ARLLLRLHYP SEGYQVELVR DSLFLGWQNR  360
HLFSVSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-473936826378Protein SCARECROW
5b3h_A3e-473936825377Protein SCARECROW
5b3h_D3e-473936825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395940.10.0PREDICTED: protein MONOCULM 1-like
RefseqXP_018683568.10.0PREDICTED: protein MONOCULM 1-like
SwissprotQ9ZWC52e-87SCL18_ARATH; Scarecrow-like protein 18
TrEMBLM0RYE50.0M0RYE5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P09360_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.12e-79GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]