PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P11230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HB-other
Protein Properties Length: 968aa    MW: 105897 Da    PI: 9.2939
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P11230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.96.3e-07763157
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
               Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                           +r+R  ++++ ++ L+++F  + ++ ++e +eL++ +g+t +qV+ +F  +R + +k
  GSMUA_Achr1P11230_001  7 KRPRDLLNPKAVKYLQSVFSIKDTIGKKETRELSALCGVTVSQVREFFAGQRSRVRK 63
                           799**************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.604464IPR001356Homeobox domain
SuperFamilySSF466891.5E-7567IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-6671IPR009057Homeodomain-like
SMARTSM003892.1E-4668IPR001356Homeobox domain
PfamPF000462.0E-4763IPR001356Homeobox domain
CDDcd000862.36E-5763No hitNo description
Gene3DG3DSA:1.20.930.105.5E-6196287IPR017923Transcription factor IIS, N-terminal
SuperFamilySSF476768.11E-5200287IPR017923Transcription factor IIS, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 968 aa     Download sequence    Send to blast
MQCFTGKRPR DLLNPKAVKY LQSVFSIKDT IGKKETRELS ALCGVTVSQV REFFAGQRSR  60
VRKLVRLSRE KATRLEASKI SNEEHSSSSD QLKPISKEPS GNAADALVIR EIKPFPDNTG  120
TLGTVKIDQQ DIPNSTGLVK VEEGCRSLSQ EKTVPGVDSD DKEFLDNIFN LMRKEDTFSG  180
QVKLLEWVLC IQNTAVLIWF SNNGGISILA TWLSQAATEE QTTMLLVIFK VLYHLPLHKA  240
LPVHMSAIVP AVNRLRFYRT SDISNRARIL LSRWSKVFKK SQALKRPLVS SSNTAEIEAL  300
HKKRHSKVDI PEFILSLTGG TEITRTTDPK QTLKLLPASS DSSKKHDRSV SLTKFKERRK  360
VLLVEQPDHK AGGRSAQVVR MVSSNHSRPM SADDIQKAKL RAMFMQHKYG KADPSSSGSK  420
SQKNEDLKAS SASQTNNIMS ECKSPQDPPL IKEENSITVS TTDNLLNESE TLINSNPDST  480
PKQVSSGMLN CKLIQWKIPP GTYMNVEWSV GAGENSKEVD AQTQRTRREK ETLSSRLQDI  540
PHDPKEPWDL EMDFDDSLTP EIPTEQPPDA DVEEGPSSSP VKQVDEAPAT VSAPVTTTAS  600
VPSTSDGAPE PDLELLAVLL KNPDLVFALT STQGKNLSSE EMVALLDMLK RNGVALTGML  660
NEVAQPEGKS HPETTPQVQE PPASLPSPTP PSEAARGRWR SEFPVFSRTP VLQPHLPGNR  720
PAAAPPVAAP GLAPSILSMP QVTAAIDSAR QIFPSSSLLP TVSSSAPALP PQTPYAMYPM  780
QQSPVPDFGL PNTAVISSMP RHGSFDHGPS SISGIPSLPT LPHTLQAAHP LPKFEASRAP  840
AWPPAPGAAA AVVRRDTTPD RCFPIQNSYG SHPSGPAPSS HLLPGRRRGE DRNGIELEAR  900
SPTGGPATTF PELQGGWSYN DGSRRDSGWD KRPEWSRQQA PVSRDRHWSG GGDKRKSYMT  960
RNLINVHV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405650.10.0PREDICTED: homeobox protein LUMINIDEPENDENS-like
TrEMBLM0RYY20.0M0RYY2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P11230_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80433034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-145HB-other family protein