PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P11500_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Trihelix

Protein Properties

Length: 247aa MW: 27793.6 Da PI: 10.3847

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P11500_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.4	6.5e-17	22	111	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +W++ e+ aL++a ++ +l+rg+l++++W+ev++ + + r r+ +qCk++++ l+k+yk +k++ ++ +++s++p+f+ GSMUA_Achr1P11500_001 22 CWSEGETSALVDAWGDRYIELNRGNLRQKDWQEVADSVnsrrgAGRRPPRTDVQCKNRIDTLKKKYKVEKARITSG--GAESQWPFFS 107 7***********************************97655455557889******************98..66678*** PP trihelix 84 qlea 87 +l+a GSMUA_Achr1P11500_001 108 RLDA 111 *985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-27	20	112	No hit	No description
Gene3D	G3DSA:1.10.10.60	0.001	23	86	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEGREVAPSR PPNPAMPYRE DCWSEGETSA LVDAWGDRYI ELNRGNLRQK DWQEVADSVN 60 SRRGAGRRPP RTDVQCKNRI DTLKKKYKVE KARITSGGAE SQWPFFSRLD ALIGSASAPA 120 VKKAPASPPL ALPLPFHRRG TPLPAAAAEV EGSDSLSRSS SKLGRGLKRG REGEGNGIRE 180 LAKAITRFAE IYERVEESKQ KQMMELEKQR MEFAKALEFQ KMQIFVDSQL QLAKIKRVKR 240 SDTDSYM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009405284.1	1e-155	PREDICTED: trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8	4e-39	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	M0RZ09	1e-180	M0RZ09_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P11500_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2065	32	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-39	sequence-specific DNA binding transcription factors