PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P11980_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 166aa    MW: 18852.1 Da    PI: 10.218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P11980_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-081664755
                           HHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                    HLH  7 erErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                            +Er+RR  +++  ++L +l+P +  + sk+ +   + L +A +YIk+Lq
  GSMUA_Achr1P11980_001 16 TVERNRRICMKNLCFKLTSLIPRD-TTMSKRaMRDQDQLDQAFNYIKELQ 64
                           69*********************6.4788888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-101187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-101479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-51664IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKASAGVEGA KIERRTVERN RRICMKNLCF KLTSLIPRDT TMSKRAMRDQ DQLDQAFNYI  60
KELQGRVEKL KQKKEMRRMT ADLHFLLVEV RSMDSTLLVS FVSGSRSSYM FGKVIGVLEE  120
EGAEVISASF NLVGGRIFHT IHCQAFCSRI GLEPSSVNEK LKKLAC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404833.11e-120PREDICTED: transcription factor bHLH120-like
TrEMBLM0RZ561e-118M0RZ56_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P11980_0011e-119(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-23bHLH family protein