PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P12270_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HD-ZIP
Protein Properties Length: 293aa    MW: 33411.4 Da    PI: 6.291
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P12270_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.5e-1990143356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k+++++ eq+++Le+ Fe+ +++  e++ +LA  lgL+ rqV +WFqNrRa++k
  GSMUA_Achr1P12270_001  90 KKRRLKMEQVRTLEKSFEQGNKLEPERKMQLAGALGLQPRQVAIWFQNRRARWK 143
                            4568999**********************************************9 PP
2HD-ZIP_I/II130.85.4e-4289179191
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrl+ eqv++LE+sFe+ +kLeperK++la +Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+ene+L++++++L+
  GSMUA_Achr1P12270_001  89 EKKRRLKMEQVRTLEKSFEQGNKLEPERKMQLAGALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFEAMKSENESLHEQNKKLQ 176
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eel 91 
                            +e+
  GSMUA_Achr1P12270_001 177 AEI 179
                            997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-1980147IPR009057Homeodomain-like
PROSITE profilePS5007116.94185145IPR001356Homeobox domain
SMARTSM003891.2E-1888149IPR001356Homeobox domain
PfamPF000463.5E-1690143IPR001356Homeobox domain
CDDcd000864.28E-1690146No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2092152IPR009057Homeodomain-like
PRINTSPR000312.0E-5116125IPR000047Helix-turn-helix motif
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PRINTSPR000312.0E-5125141IPR000047Helix-turn-helix motif
PfamPF021836.8E-15145185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSCNGMASSS SSFFSSNFVL PMQTLHEEQH QIPNPVSPHP HTIPCNNLQD LRVMAPMLGK  60
RSMSFSGIEN GEEMNADDDL SDDGMQTGEK KRRLKMEQVR TLEKSFEQGN KLEPERKMQL  120
AGALGLQPRQ VAIWFQNRRA RWKTKQLEKD YDVLKRQFEA MKSENESLHE QNKKLQAEIL  180
SLKRRETSEM INLNKETEGS SSNRSENSSE INLDLSRASV TESPLNPNQS LPIFHSVRPA  240
DVDHLLLHSS SRPELQCPKI DHGVTEGSFS NLLCSMEDQS ASFWSWSDQH NFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994KKRRLK
2137145RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683183.10.0PREDICTED: homeobox-leucine zipper protein HOX21-like
SwissprotQ8S7W95e-92HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLM0RZ850.0M0RZ85_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P12270_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-74HD-ZIP family protein