PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P12710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 145aa    MW: 16545.9 Da    PI: 9.2128
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P12710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.31.6e-133088462
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
                            k+ rr+++NRe+ArrsR RK++ ++eL     +L +eN++L    +  k+++ ++++e
  GSMUA_Achr1P12710_001 30 QKKLRRMISNRESARRSRMRKQKHLDELMAHLNQLRKENRQLSTAFSLTKQQYVAVEAE 88
                           6999***************************************9999999988776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.7E-112180No hitNo description
SMARTSM003383.0E-152791IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.3352992IPR004827Basic-leucine zipper domain
PfamPF001704.1E-103182IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.56E-113183No hitNo description
CDDcd147023.49E-163282No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MASSPSGTSS GSSQLQNSGS EEDLQAVMDQ KKLRRMISNR ESARRSRMRK QKHLDELMAH  60
LNQLRKENRQ LSTAFSLTKQ QYVAVEAENC VLRAQMMELG NRLQSLDEIL SFLNMNINIS  120
GHQMIDNSIK CLNQPIMASA DMFYY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14350RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404024.11e-103PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L52e-37BZP44_ARATH; bZIP transcription factor 44
TrEMBLM0RZC91e-101M0RZC9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P12710_0011e-102(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.11e-34G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]