PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P14400_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 167aa MW: 18618.4 Da PI: 11.1573

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P14400_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.5e-08	90	130	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rrRR+ri +++ L++l+P K++ a++L +A +Y+k L GSMUA_Achr1P14400_001 90 ARRRRERISERLRVLQRLVPGG-----SKMDTATMLDEAANYLKFL 130 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.161	81	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-12	86	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.85E-15	87	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-13	87	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.6E-6	90	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MASRVSPDPL LPTAKRKPNS SPEEEGLRKN PRSEKHSSSV AIETVAEAKE MIYRAAALRP 60 LTLGMEEAAA AEKPKRKNVK ISSDPQTVAA RRRRERISER LRVLQRLVPG GSKMDTATML 120 DEAANYLKFL KSQVRALETL GERHGHATNS AIHPFPLALN QAFRMQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	93	KRKNVKISSDPQTVAARRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009401949.2	1e-116	PREDICTED: transcription factor HEC3-like
Swissprot	Q8S3D2	5e-45	BH087_ARATH; Transcription factor bHLH87
TrEMBL	M0RZU8	1e-116	M0RZU8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P14400_001	1e-117	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	4e-32	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]