PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P14780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 126aa    MW: 13214.3 Da    PI: 9.2214
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P14780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.89.9e-211347135
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+g+
  GSMUA_Achr1P14780_001 13 CADCRTTKTPLWRAGPSGPKSLCNACGIRYRKNGR 47
                           ********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.6E-20758IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.2E-181157IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.57E-141157No hitNo description
PROSITE patternPS0034401338IPR000679Zinc finger, GATA-type
CDDcd002027.22E-171359No hitNo description
PfamPF003201.9E-181347IPR000679Zinc finger, GATA-type
PROSITE profilePS5011415.4331362IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDASSSDCQL KCCADCRTTK TPLWRAGPSG PKSLCNACGI RYRKNGRALP VSKKKKVEIG  60
SGGGEGFGGV FQASEAGVGF AGARTMIQKQ RRRGMLGEEE AAVSAGFLYA PCSESLAVSM  120
LCMLVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406488.14e-75PREDICTED: GATA transcription factor 16-like
TrEMBLM0RZY68e-86M0RZY6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P14780_0011e-86(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-18GATA transcription factor 23