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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSMUA_Achr1P15330_001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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| Family |
C2H2 |
| Protein Properties |
Length: 281aa MW: 31612.2 Da PI: 7.6605 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSMUA_Achr1P15330_001 | genome | CIRAD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22.9 | 2.2e-07 | 135 | 157 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
GSMUA_Achr1P15330_001 135 HYCQVCGKGFKRDANLRMHMRAH 157
68*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MDAQRRDLLY HLAVLNEKVQ QVQSLVGLVV SPELLRQEPL DAVVSGARSL VQEIIVAASS 60
MMHALQQQQQ QEEEKEEEEE EENEAVGYEA TGAALDHDLH RLLDGVLECS VGGEGGSRCE 120
IVEVDAADLV AKYTHYCQVC GKGFKRDANL RMHMRAHGEE YKTITALAKG APPPVAGAAR 180
RYSCPQEGCR WNRKHAKFQP LKSMVCVKNH YRRSHCPKMY VCNRCNRRQF AVLSDLRTHE 240
KHCGDLRWMC SCGTTFTRKD KLMGHVSLFL GHTPLPNCLA K
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK063290 | 2e-40 | AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence. |
| GenBank | AP004587 | 2e-40 | AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10. |
| GenBank | AP005544 | 2e-40 | AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01. |
| GenBank | AP014964 | 2e-40 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012616 | 2e-40 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
