PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P16280_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 220aa MW: 25338.8 Da PI: 4.6052

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P16280_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63	4.4e-20	27	78	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le+ Fe + ++ a+++++LA++lgL+ rqV +WFqN+Ra++k GSMUA_Achr1P16280_001 27 RRFSEEQIRSLESTFEAQTKLEARQKQQLARELGLQPRQVGIWFQNKRARWK 78 38*************************************************9 PP
2	HD-ZIP_I/II	111.1	7.2e-36	25	113	2	90
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 + rr+s+eq+++LE++Fe+++kLe ++K++lareLglqprqv +WFqn+RAR+k+kql+++y+aL++ ydal ++ ++L+ke++ L + GSMUA_Achr1P16280_001 25 RTRRFSEEQIRSLESTFEAQTKLEARQKQQLARELGLQPRQVGIWFQNKRARWKSKQLDREYRALRADYDALLSRFDSLNKEKQLLLK 112 789********************************************************************************99876 PP HD-ZIP_I/II 90 e 90 + GSMUA_Achr1P16280_001 113 Q 113 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.2E-19	11	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.54E-18	18	82	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	20	80	IPR001356	Homeobox domain
SMART	SM00389	2.2E-17	21	84	IPR001356	Homeobox domain
CDD	cd00086	3.05E-14	25	81	No hit	No description
Pfam	PF00046	2.2E-17	27	78	IPR001356	Homeobox domain
PRINTS	PR00031	5.5E-6	51	60	IPR000047	Helix-turn-helix motif
PRINTS	PR00031	5.5E-6	60	76	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.4E-13	80	121	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MGESEERCGG EEEEECCSKS SKGDRTRRFS EEQIRSLEST FEAQTKLEAR QKQQLARELG 60 LQPRQVGIWF QNKRARWKSK QLDREYRALR ADYDALLSRF DSLNKEKQLL LKQRQGLTEL 120 LDKTEKNDRD AASKEKEWPR PSLKEEPDLE FAGCTEEEED DDDNTLSYLC EDEPGPRAVQ 180 PATSSVPSSA EKQLHSATGR AAAQTSCSNS PWWEFWPLSE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00650	PBM	Transfer from LOC_Os09g35910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009399995.1	1e-157	PREDICTED: homeobox-leucine zipper protein HOX6-like
Swissprot	Q651Z5	2e-42	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	2e-42	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	M0S0D6	1e-156	M0S0D6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P16280_001	1e-157	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	4e-39	homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]