PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P16440_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 249aa MW: 27410.5 Da PI: 8.7241

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P16440_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.3	1.8e-33	30	84	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ekAtPk+i+++m+vkgLtl h+kSHLQkYRl GSMUA_Achr1P16440_001 30 KPRLRWTADLHERFVDAVAQLGGPEKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 84 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.0E-32	27	85	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.677	27	87	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.7E-24	30	85	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.7E-16	30	86	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-8	32	83	IPR001005	SANT/Myb domain
Pfam	PF14379	2.1E-19	125	170	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MFSGLIHRPE ASIPPEDAHG PSLVLTADPK PRLRWTADLH ERFVDAVAQL GGPEKATPKA 60 IMRTMGVKGL TLFHLKSHLQ KYRLGKQSGK EMTEQSKDAS YLLENPGSSS LSPRVPTPDV 120 NEGQEVKEAL RAQMEVQRRL YEQVEVQKHV QIRMGAYQKY IDSLLARACK IASEQIALNS 180 FGTAEHELPD MTPRVVCPPS SPLSPSILHQ LSVSSINLQS PGCKTSPSSS AIEGQLFCQK 240 PPELKNKPC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-19	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-19	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-19	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-19	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-19	30	86	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009399785.1	0.0	PREDICTED: protein PHR1-LIKE 2 isoform X1
Swissprot	Q94A57	1e-69	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	M0S0F2	0.0	M0S0F2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P16440_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	2e-71	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]