PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P17150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 586aa    MW: 64196.4 Da    PI: 4.9068
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P17150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.1e-1871118148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+WT  Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l
  GSMUA_Achr1P17150_001  71 KGPWTSAEDAILIDYVKKHGEGNWNAVQKHTGLSRCGKSCRLRWANHL 118
                            79******************************************9986 PP
2Myb_DNA-binding54.33e-17124167146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +g++T+eE++l++++++++G++ W++ a++++ gRt++++k++w++
  GSMUA_Achr1P17150_001 124 KGAFTPEEEQLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 167
                            799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.07766118IPR017930Myb domain
SuperFamilySSF466893.59E-3170165IPR009057Homeodomain-like
SMARTSM007179.7E-1670120IPR001005SANT/Myb domain
PfamPF002495.2E-1671118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2572125IPR009057Homeodomain-like
CDDcd001674.83E-1273118No hitNo description
PROSITE profilePS5129427.068119173IPR017930Myb domain
SMARTSM007171.5E-17123171IPR001005SANT/Myb domain
PfamPF002492.2E-16124167IPR001005SANT/Myb domain
CDDcd001677.65E-13126167No hitNo description
Gene3DG3DSA:1.10.10.609.7E-27126172IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MIREERERER SDLFDCISHS HISGGFGFWV MNGVPNESDR RMVPKDEIDS TSIEEDSSGG  60
SLNGGNQVLK KGPWTSAEDA ILIDYVKKHG EGNWNAVQKH TGLSRCGKSC RLRWANHLRP  120
NLKKGAFTPE EEQLIIELHA KMGNKWARMA AHLPGRTDNE IKNYWNTRIK RRQRAGLPLY  180
PPNINFQVSD ENQQSKNVNE YSYSDKQPNE LMQGSNFDIP DITFENFNAN YGSLSYAPPF  240
PDIAASNMLN QRIGSLHYPF TNPMSCVKHL RDSENLIPDL HGTDSDGLST YEHFLFKPSG  300
KIKQTFGLGY PYDPDPNGES LTPLESAVPG SHALLNGTFS ASSPIDGTVK LELPSLQYTE  360
TDGNSWLACS STPLEAADTY IESPPTTVSL QSECISPRNS GLLEALLHEA QTLGSAKKKP  420
SDKSSSSTIT PGNVAECSGV SISEKLEEYN DPISPLGRSA SSVFNEYTPP ISGSSLDEFP  480
HSMAPSISAA SDNILVTAKH VSSPNVVDKG ISPCRPDALL GSVWLDDGSQ SAKDQSVFND  540
AIAILLGQDL CNEYKHLPSE PPSMLVQGFG LDSDPWNNMP SACQMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32691725107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398954.10.0PREDICTED: transcription factor GAMYB-like isoform X1
TrEMBLM0S0M30.0M0S0M3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P17150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.11e-109myb domain protein 65