PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P17440_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

BES1

Protein Properties

Length: 699aa MW: 78247 Da PI: 6.1791

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P17440_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	126	4.7e-39	41	112	2	73
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgs 73 gs+r+++++E+E++k+RER+RRai+ +i+aGLR++Gny+l++raD+neV++AL+reAGwvv +DGtt++ ++ GSMUA_Achr1P17440_001 41 GSRRSRPAEEKERTKLRERHRRAITGRILAGLRRHGNYNLRVRADINEVIAALAREAGWVVLPDGTTFPSSQ 112 89******************************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.8E-35	41	155	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	7.96E-186	200	659	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.4E-201	203	635	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	5.9E-109	209	625	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-76	240	254	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-76	261	279	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-76	283	304	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.2E-8	366	375	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	6.3E-76	376	398	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-76	449	468	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-76	483	499	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-76	500	511	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-76	518	541	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.2E-8	521	531	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	6.3E-76	558	580	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.2E-8	609	623	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	2.2E-8	624	638	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MVAGAVEIGG GGRYFLALPD LPQESGDRAD APASASGSGS GSRRSRPAEE KERTKLRERH 60 RRAITGRILA GLRRHGNYNL RVRADINEVI AALAREAGWV VLPDGTTFPS SQVSSLSLSL 120 SLLLPLFCFL ANSDLDGSTL WQNSNLSVPI AARQPSVSPN STSQTGEKVA DSSPLIGSST 180 DSGNDKQLMD LIPRMPERDF AGSPYVPVYV MLPLGVVNTY CELVDPDGLM EQLKKLKSIG 240 VDGVMVDCWW GIVEAHIPQQ YNWKGYMHLF QIVRDTKLKL QVVMSFHECG GKVGDDMCIP 300 LPQWVAEIGR SNPNIYFTDS EGRCNPECLS WGVDKERVLL GRTALEVYFD FMRSFRVEFD 360 EFFEDGTICE IEIGLGPYGE LRYPSYPVRH GWRYPGIGEF QCYDSFLQKS LKKAADARGH 420 SVWARGPHNA GSYNSQPHET GFLCDGGEYN SQYGRFFLGW YSQVLVEHGD SVLFLAKLAF 480 DGSSIAVKIS GIHWWYKTAS HAAELTAGFY NPCNRDGYAP IASMLKKHGA ALNFTCTELH 540 TLDHYEDFPE AMADPEGLVW QVLNAAWDVG IPVASENALP CYDRDSYNKI LESAKPLNDP 600 DGRHLSSFTF LRLSPVLMQN HNLLEFERFV KQMHALLVFT LPIKFFTYIP ATTSYRMHYI 660 KYFVMVHESN LANRLIFITF SFLCALETIL LSYRNEVFP

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MVAGAVEIGG GGRYFLALPD LPQESGDRAD APASASGSGS GSRRSRPAEE KERTKLRERH  60
RRAITGRILA GLRRHGNYNL RVRADINEVI AALAREAGWV VLPDGTTFPS SQVSSLSLSL  120
SLLLPLFCFL ANSDLDGSTL WQNSNLSVPI AARQPSVSPN STSQTGEKVA DSSPLIGSST  180
DSGNDKQLMD LIPRMPERDF AGSPYVPVYV MLPLGVVNTY CELVDPDGLM EQLKKLKSIG  240
VDGVMVDCWW GIVEAHIPQQ YNWKGYMHLF QIVRDTKLKL QVVMSFHECG GKVGDDMCIP  300
LPQWVAEIGR SNPNIYFTDS EGRCNPECLS WGVDKERVLL GRTALEVYFD FMRSFRVEFD  360
EFFEDGTICE IEIGLGPYGE LRYPSYPVRH GWRYPGIGEF QCYDSFLQKS LKKAADARGH  420
SVWARGPHNA GSYNSQPHET GFLCDGGEYN SQYGRFFLGW YSQVLVEHGD SVLFLAKLAF  480
DGSSIAVKIS GIHWWYKTAS HAAELTAGFY NPCNRDGYAP IASMLKKHGA ALNFTCTELH  540
TLDHYEDFPE AMADPEGLVW QVLNAAWDVG IPVASENALP CYDRDSYNKI LESAKPLNDP  600
DGRHLSSFTF LRLSPVLMQN HNLLEFERFV KQMHALLVFT LPIKFFTYIP ATTSYRMHYI  660
KYFVMVHESN LANRLIFITF SFLCALETIL LSYRNEVFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bfn_A	1e-156	205	635	11	443	BETA-AMYLASE
1q6c_A	1e-156	205	635	11	443	beta-amylase
1wdp_A	1e-156	205	635	11	443	Beta-amylase
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018685590.1	0.0	PREDICTED: beta-amylase 2, chloroplastic-like isoform X1
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	M0S0Q2	0.0	M0S0Q2_MUSAM; Beta-amylase
STRING	GSMUA_Achr1P17440_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]