PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P17980_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WOX

Protein Properties

Length: 237aa MW: 26696.8 Da PI: 6.3474

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P17980_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.6	1.6e-21	61	121	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le++F++ n +ps+++++e++ +l +++e++V++WFqNrRa+ k+ GSMUA_Achr1P17980_001 61 RQRWTPTTMQLQILESMFNQgNGTPSKQKIKEITIELsqhgQISESNVYNWFQNRRARSKR 121 89***************99************************************97 PP
2	Wus_type_Homeobox	102.2	3.6e-33	60	123	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++it eL+++G+i++ NV++WFQNr+aR+++kq GSMUA_Achr1P17980_001 60 ARQRWTPTTMQLQILESMFNQGNGTPSKQKIKEITIELSQHGQISESNVYNWFQNRRARSKRKQ 123 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-17	55	125	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.9	57	122	IPR001356	Homeobox domain
SMART	SM00389	4.4E-14	59	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.67E-18	60	124	IPR009057	Homeodomain-like
Pfam	PF00046	3.3E-19	61	121	IPR001356	Homeobox domain
CDD	cd00086	2.54E-14	61	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MTDEQLEVLR RQIAVYATIC EQLVEMHKAI TAHHDSLAGM RLGGLYGDPL MASGGHKITA 60 RQRWTPTTMQ LQILESMFNQ GNGTPSKQKI KEITIELSQH GQISESNVYN WFQNRRARSK 120 RKQMASFPSN TESEVEADEE CMNEKKPKPD GSHHEGMPAG VNNLPMYDAQ LHSFERELSQ 180 AQGIHRSSES SKSSSGSGQM SLNEYVLSTP RFDNSMEKFD IPSFNPYHPG ESYDIMG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009397943.1	1e-179	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	4e-84	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	M0S0V6	1e-179	M0S0V6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P17980_001	1e-179	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-67	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]