PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P18230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 190aa    MW: 20558.2 Da    PI: 8.1191
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P18230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-202675255
                    AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+ +l+g
  GSMUA_Achr1P18230_001 26 RFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAAIALRG 75
                           79*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.02E-172581No hitNo description
PROSITE profilePS5103223.5512683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-322683IPR001471AP2/ERF domain
PfamPF008474.7E-132675IPR001471AP2/ERF domain
SMARTSM003805.8E-372689IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-222683IPR016177DNA-binding domain
PRINTSPR003672.2E-102738IPR001471AP2/ERF domain
PRINTSPR003672.2E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MRKGSAQAVD PLAAAQIGGA IAVEKRFRGV RKRPWGRFAA EIRDPWKKTR VWLGTFDSAE  60
DAARAYDAAA IALRGPKAKT NFPSPPSPFP PAALPAAAAH FSFHHRQQHY PQPPPPPQRP  120
TSSSHSSTAN PPPPPRVLNG DDDCHSDCGS SSSVIDDDGD VVLMCRPPLP FDLNLLPLPD  180
DDLHDTVLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-202583463ATERF1
3gcc_A1e-202583463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413291.14e-75PREDICTED: ethylene-responsive transcription factor 3-like
TrEMBLM0S0Y11e-133M0S0Y1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P18230_0011e-134(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-23ethylene responsive element binding factor 3