PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P18650_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SRS
Protein Properties Length: 308aa    MW: 32558.2 Da    PI: 7.5219
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P18650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702211.61.9e-65892303154
                 DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 
                            sg +sCqdCGnqakkdCah+RCRtCCksrgf+C thvkstWvpaakrrerqq+l+a+        a+a skr+re   ++ + l ++ 
  GSMUA_Achr1P18650_001  89 SGVMSCQDCGNQAKKDCAHMRCRTCCKSRGFQCPTHVKSTWVPAAKRRERQQELTAS--------AAAPSKRPREI--TACTRLPAAM 166
                            7889**********************************************9999886........56788999987..5555666666 PP

                 DUF702  91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                             s+++   +l+ +s+P+evs++avfrcvr+s vd++++ +aYq+avsigGhvfkG+Lyd+G+e+
  GSMUA_Achr1P18650_001 167 ASTTTYGGSLDPESFPPEVSAQAVFRCVRLSHVDEADDIYAYQAAVSIGGHVFKGLLYDHGPEA 230
                            666677778999**************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.9E-6291229IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.5E-2793135IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.7E-23181228IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAGFFLGGGG GSQQQRGEQQ GGGIPPSESF FLYGVRGGRG EDVAYTRGFE LWQHHQIQRE  60
QQLYSTAGFP DELPSVAPRP ARGSLGGGSG VMSCQDCGNQ AKKDCAHMRC RTCCKSRGFQ  120
CPTHVKSTWV PAAKRRERQQ ELTASAAAPS KRPREITACT RLPAAMASTT TYGGSLDPES  180
FPPEVSAQAV FRCVRLSHVD EADDIYAYQA AVSIGGHVFK GLLYDHGPEA EYPSSSSSRY  240
QLHHGEGSSS PAAAAATAIV SASASASAGD AAIATTATAA ATELLEPYPT PLSAFMAGTQ  300
FFPHQHRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2412853e-43AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence.
GenBankAP0053143e-43AP005314.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0515E01.
GenBankAP0055673e-43AP005567.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1254_E07.
GenBankAP0149653e-43AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126173e-43CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412816.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
TrEMBLM0S1230.0M0S123_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P18650_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-57Lateral root primordium (LRP) protein-related