PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P19120_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 429aa MW: 46820.4 Da PI: 7.2329

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P19120_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	253	301	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sLq GSMUA_Achr1P19120_001 253 NSHSLAERVRREKISERMKYLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 301 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.58E-10	248	305	No hit	No description
SuperFamily	SSF47459	4.32E-17	248	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.491	250	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.7E-17	251	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	253	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-10	256	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MEMNEDRKFG LEKSHGDHLN NHSSGVSADW QFNTPAMSAA PPHPSTAASL VPPLTSSPLL 60 SAPNTTSAIG SIPIGRPVAM SSKGMLLSTP PVIFPPSLPH FPADSGFIER AARFSCLSGS 120 SFMDMNLLRP SQSVAPARKA SKVVMETQVQ NTELSMTGDK AVSLPAAYGS IDQSRMDTQR 180 DRRSSHISNS ESQETNFCEG GQEGNVDSSD VAGNSSPIEQ NSSKHGGKNG KDNSEAAKEG 240 YVHVRARRGQ ATNSHSLAER VRREKISERM KYLQELVPGC SKVTGKAVML DEIINYVQSL 300 QRQVEFLSMK LSAVNPQLDF SVERLLAKNL RHSHGSPLSI AGFSQEMSYP QVYPSQQGLG 360 HAGGSTMVNL SDTYRRTMNT QLPTMSGYKE PSMQMHNPWN EEIIMQMDYD ANHPPNAQEI 420 NRKPDGFTI

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MEMNEDRKFG LEKSHGDHLN NHSSGVSADW QFNTPAMSAA PPHPSTAASL VPPLTSSPLL  60
SAPNTTSAIG SIPIGRPVAM SSKGMLLSTP PVIFPPSLPH FPADSGFIER AARFSCLSGS  120
SFMDMNLLRP SQSVAPARKA SKVVMETQVQ NTELSMTGDK AVSLPAAYGS IDQSRMDTQR  180
DRRSSHISNS ESQETNFCEG GQEGNVDSSD VAGNSSPIEQ NSSKHGGKNG KDNSEAAKEG  240
YVHVRARRGQ ATNSHSLAER VRREKISERM KYLQELVPGC SKVTGKAVML DEIINYVQSL  300
QRQVEFLSMK LSAVNPQLDF SVERLLAKNL RHSHGSPLSI AGFSQEMSYP QVYPSQQGLG  360
HAGGSTMVNL SDTYRRTMNT QLPTMSGYKE PSMQMHNPWN EEIIMQMDYD ANHPPNAQEI  420
NRKPDGFTI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009412181.1	0.0	PREDICTED: transcription factor bHLH76-like
Refseq	XP_009412189.1	0.0	PREDICTED: transcription factor bHLH76-like
TrEMBL	M0S170	0.0	M0S170_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P19120_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	8e-69	bHLH family protein