PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P19420_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YC
Protein Properties Length: 195aa    MW: 22379.8 Da    PI: 6.773
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P19420_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.91.2e-144986135
                  NF-YC  1 qlksfwekq...iekatdfknhelPlarikkilkaded 35
                           ql++fw++q   ie++tdfknh+lPlarikki+kaded
  GSMUA_Achr1P19420_001 49 QLQMFWADQyreIEQTTDFKNHSLPLARIKKIMKADED 86
                           89*****99999*************************9 PP
2NF-YC37.84.2e-128511769101
                  NF-YC  69 nkrrtlkksdiaaavtrtdifdflvdivprdel 101
                             +rrtl+k+diaaav+rtd+fdfl+divpr+e 
  GSMUA_Achr1P19420_001  85 EDRRTLQKNDIAAAVSRTDVFDFLIDIVPREEG 117
                            579***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-1243108IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.9E-86386IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.4E-887114IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDQPGQTAPP MIGVATGVPY AAAAAASAGG PYQAYQHLYQ QQQQQQQQQL QMFWADQYRE  60
IEQTTDFKNH SLPLARIKKI MKADEDRRTL QKNDIAAAVS RTDVFDFLID IVPREEGKED  120
VARPLGAPPT DPMSYYYLWL LLWREWLVLR RTCLPCSLYG LQHYIPYQAL LLSLIVVLKC  180
LIPIDYMFDL ARRGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0092246e-37BT009224.1 Triticum aestivum clone wle1n.pk0076.h7:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411998.17e-66PREDICTED: nuclear transcription factor Y subunit C-6-like
TrEMBLM0S1A01e-141M0S1A0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P19420_0011e-142(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-31nuclear factor Y, subunit C2