PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P19470_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRAS

Protein Properties

Length: 383aa MW: 42827.3 Da PI: 7.0647

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P19470_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	67.6	2.5e-21	38	134	2	106
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 ++lLl+cAe + gdl +aq++ + l +asp+gd++ Rl++ f++AL+ r+ r + +++a +p++ + +++ f++++P GSMUA_Achr1P19470_001 38 RQLLLSCAELAHRGDLPAAQRTASLLLATASPYGDSTDRLVHQFARALSLRVERLLPPVVDAASPEALQ--------SSYLSFNQITP 117 79**************************************************777777766666655........56778** PP GRAS 90 ilkfshltaNqaIleav 106 +l+f+hltaNqaIlea GSMUA_Achr1P19470_001 118 FLRFAHLTANQAILEAR 134 *************95 PP
2	GRAS	259.5	1.2e-79	137	382	136	373
GRAS 136 pegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.........vakrledleleeLrvkpgEalaVnlvlqlhrll 214 p++pps+R+Tg gs + e l++tg+rL+ fA++l+++f+f++l ++++ +dl+ ++++++pgE laVn+vl lh+ll GSMUA_Achr1P19470_001 137 PKDPPSIRVTGTGS----NLEVLRRTGDRLQTFADSLNLHFQFHPLllpstssnpLSSTSADLTSSSFQIHPGEILAVNCVLFLHKLL 220 589*********....99**********************9999988899999*********************** PP GRAS 215 desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 ++ + ++ +++L++v+ ++P vv+v+e+ea+hns+ Fl+rf+eal+yy+a+f+slea+lp++s+er+ vE+++l++ei++vv+ GSMUA_Achr1P19470_001 221 KDGGGSDGshDLRAFLQAVRAMNPAVVTVAEREASHNSPIFLQRFTEALDYYTAVFESLEATLPPTSRERVAVEQVWLSKEIEDVVSR 308 99988776557889********************************************************************** PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 eg+ rrerhe++e W++ +++aGF+++pls +a +qa+lllr ++ s+gy+++ ++s++lgW++++L+svS+W GSMUA_Achr1P19470_001 309 EGDGRRERHERFEWWEALMRRAGFTNLPLSPFALSQARLLLRLHYpSEGYQLQMVRDSFFLGWQKKSLFSVSSW 382 ************************************************************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.439	11	362	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.6E-19	38	134	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.2E-77	137	382	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MLSSLKSHEE GDQEHHRHSN PLHPNPQHGQ ISPSAHARQL LLSCAELAHR GDLPAAQRTA 60 SLLLATASPY GDSTDRLVHQ FARALSLRVE RLLPPVVDAA SPEALQSSYL SFNQITPFLR 120 FAHLTANQAI LEARSDPKDP PSIRVTGTGS NLEVLRRTGD RLQTFADSLN LHFQFHPLLL 180 PSTSSNPLSS TSADLTSSSF QIHPGEILAV NCVLFLHKLL KDGGGSDGSH DLRAFLQAVR 240 AMNPAVVTVA EREASHNSPI FLQRFTEALD YYTAVFESLE ATLPPTSRER VAVEQVWLSK 300 EIEDVVSREG DGRRERHERF EWWEALMRRA GFTNLPLSPF ALSQARLLLR LHYPSEGYQL 360 QMVRDSFFLG WQKKSLFSVS SWH

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MLSSLKSHEE GDQEHHRHSN PLHPNPQHGQ ISPSAHARQL LLSCAELAHR GDLPAAQRTA  60
SLLLATASPY GDSTDRLVHQ FARALSLRVE RLLPPVVDAA SPEALQSSYL SFNQITPFLR  120
FAHLTANQAI LEARSDPKDP PSIRVTGTGS NLEVLRRTGD RLQTFADSLN LHFQFHPLLL  180
PSTSSNPLSS TSADLTSSSF QIHPGEILAV NCVLFLHKLL KDGGGSDGSH DLRAFLQAVR  240
AMNPAVVTVA EREASHNSPI FLQRFTEALD YYTAVFESLE ATLPPTSRER VAVEQVWLSK  300
EIEDVVSREG DGRRERHERF EWWEALMRRA GFTNLPLSPF ALSQARLLLR LHYPSEGYQL  360
QMVRDSFFLG WQKKSLFSVS SWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-49	44	382	26	378	Protein SCARECROW
5b3h_A	1e-48	44	382	25	377	Protein SCARECROW
5b3h_D	1e-48	44	382	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009411905.1	0.0	PREDICTED: protein MONOCULM 1-like
Swissprot	Q9ZWC5	1e-102	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	M0S1A5	0.0	M0S1A5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P19470_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-92	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]