PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P20710_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YB

Protein Properties

Length: 118aa MW: 13233.7 Da PI: 4.1869

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P20710_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	38.2	3.4e-12	11	57	39	85
NF-YB 39 vsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 efi +++se+++ c+re++kti+++ +l al lGf +y+e++ + GSMUA_Achr1P20710_001 11 SLEFINLLSSESNEVCNREDKKTIAPEHVLKALEVLGFGEYIEEVYA 57 569****************************************9854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.1E-23	3	103	IPR009072	Histone-fold
SuperFamily	SSF47113	2.41E-22	5	104	IPR009072	Histone-fold
Pfam	PF00808	4.3E-8	8	43	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MDFLAYLSAA SLEFINLLSS ESNEVCNRED KKTIAPEHVL KALEVLGFGE YIEEVYAAYE 60 QHKLDTLDSP KGGKFSGIEM TEEEALAEQQ RMFAEARARM NNGVSIQKQP EADNNLES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	1e-21	13	97	48	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009410380.1	3e-73	PREDICTED: protein Dr1 homolog
Swissprot	P49592	2e-48	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	M0S1M9	6e-81	M0S1M9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P20710_001	1e-81	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5720	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	1e-52	nuclear factor Y, subunit B13

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]