PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P20970_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 251aa MW: 26717.5 Da PI: 10.1509

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P20970_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.6	1.3e-30	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C++lr++C+++C+++p++ p++q++++a+++k++G++ +++l++a e+ r+++++sl++eA+ r+ +PvyG+vg+++++ GSMUA_Achr1P20970_001 4 SCNGCRILRKACTDGCTIRPCLqwiknPEAQANATAFLAKFYGRAGLVNLINAGTEHLRPAIFRSLLFEACGRIVNPVYGSVGLLWSG 91 6************************************************************************************* PP DUF260 84 qqqleqlkaelallke 99 ++ql+q+++e++l ++ GSMUA_Achr1P20970_001 92 SWQLCQAAVEAVLKGA 107 ********998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.426	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.0E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MRKSCNGCRI LRKACTDGCT IRPCLQWIKN PEAQANATAF LAKFYGRAGL VNLINAGTEH 60 LRPAIFRSLL FEACGRIVNP VYGSVGLLWS GSWQLCQAAV EAVLKGAPII QISSDSAAGA 120 IPAFKAHDIR HVSKNLSAGG VPGDLHEVAR KSRTRFKRSA GSPAALVVSK PGLFRRAARQ 180 ETEEEASRED GSAFSAEGSH VILGEPEGVR LDLRLGLEPE NRTGERGAEA KVRGASPSDA 240 RPVGPRLSLA A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009413952.1	0.0	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	3e-73	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	M0S1Q5	0.0	M0S1Q5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P20970_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-74	LOB domain-containing protein 41