PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P21010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 267aa    MW: 29673.3 Da    PI: 5.88
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P21010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08158205455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++iN+++  L++l+P +     k +  a +L + ++Y++sLq
  GSMUA_Achr1P21010_001 158 SHSLAERVRRRKINERMRCLQDLVPGC----YKTMGMAGMLDEIINYVQSLQ 205
                            8*************************8....35599999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.67E-10152209No hitNo description
SuperFamilySSF474592.75E-16152222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16154216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.643154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-6158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-9160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGEFVDAERF ECLKPSLPFM EMDTNLELMR QLAELNGSAM HSPSMGLMDY SEEYYLPHQS  60
EFSIPYIDDL TGPPAERQKP IAESQPAGSV GEQSHGGRKR KMIAESNASS HNFSEVYSVI  120
GSAEGSESGR RRKSNSKEAG KPKEVVHVRA RRGQATDSHS LAERVRRRKI NERMRCLQDL  180
VPGCYKTMGM AGMLDEIINY VQSLQNQVEF LSMKLSAASS FYDYSLGVEA VAITQVDGAY  240
EGEEAERAQR KGHGDCTSVH SISMPSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409985.10.0PREDICTED: transcription factor bHLH75-like
TrEMBLM0S1Q90.0M0S1Q9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P21010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15639615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.12e-52BR enhanced expression 1