PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P21020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 195aa    MW: 22218.1 Da    PI: 9.4224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P21020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-181865148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT eEd llv++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GSMUA_Achr1P21020_001 18 RGPWTLEEDTLLVHYIAFHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 65
                           89********************************************97 PP
2Myb_DNA-binding49.97.2e-1671114146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ ++eE++l++++  ++G++ W++Ia++++ gRt++++k++w++
  GSMUA_Achr1P21020_001  71 RGNLSPEEQLLILELQSKWGNR-WSRIAQYLP-GRTDNEIKNYWRT 114
                            7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6831365IPR017930Myb domain
SuperFamilySSF466896.64E-3115112IPR009057Homeodomain-like
SMARTSM007172.0E-151767IPR001005SANT/Myb domain
PfamPF002495.8E-161865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-231972IPR009057Homeodomain-like
CDDcd001675.38E-122065No hitNo description
PROSITE profilePS5129424.20266120IPR017930Myb domain
SMARTSM007172.3E-1370118IPR001005SANT/Myb domain
PfamPF002497.4E-1571114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2273119IPR009057Homeodomain-like
CDDcd001672.42E-1175114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSGKRGSSNK HEDMKLRRGP WTLEEDTLLV HYIAFHGEGR WNLLARCSGL KRTGKSCRLR  60
WLNYLKPDIK RGNLSPEEQL LILELQSKWG NRWSRIAQYL PGRTDNEIKN YWRTQTQKQA  120
RQLKIDANST VPFHSGSSDD NAHSLGACRL PPMTASADSY ATSGCTATYN NCMNSVGDSL  180
WSMDELYGML NTWMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24161205108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409973.12e-91PREDICTED: transcription factor MYB108-like
SwissprotQ9C9G76e-68MYB62_ARATH; Transcription factor MYB62
TrEMBLM0S1R01e-143M0S1R0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P21020_0011e-144(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-70myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]