PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P21280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 199aa    MW: 21891.9 Da    PI: 6.3679
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P21280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-141662354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  GSMUA_Achr1P21280_001 16 KSHSEAERRRRERINAHLARLRSLLPST-----TKTDKASLLAEVIQHVKEL 62
                           79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.7931362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-41665No hitNo description
PfamPF000101.1E-111662IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-141771IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-141772IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-131968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.04E-599169No hitNo description
CDDcd048731.50E-799167No hitNo description
Gene3DG3DSA:3.30.70.2608.3E-899171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MTPQEIMDAK ALAASKSHSE AERRRRERIN AHLARLRSLL PSTTKTDKAS LLAEVIQHVK  60
ELKRQTLEIA EESPLPTETD ELTVDATNDE DGKFLVSATL CCDDRPDLLP DLIKALKALK  120
LRTLKAEITT LGGRIKSMLL ITGEDGSDHL QQEQSIASIQ DALKAVMDRT SSADEASTAG  180
GIKRQRTTNL SSILEHRSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12126ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409645.21e-135PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y12e-71BH030_ARATH; Transcription factor bHLH30
TrEMBLM0S1T61e-138M0S1T6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P21280_0011e-139(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]