PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P21300_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRAS

Protein Properties

Length: 516aa MW: 54550.7 Da PI: 6.9025

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P21300_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	213.4	1.2e-65	200	389	1	195
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 lv++L++cAeav++++l++a+al++++s la++++ pm+++a yf+eA+a+r++r l++ ++ +++ ++ l+ f+e + GSMUA_Achr1P21300_001 200 LVHALMACAEAVQQENLKAADALVKHISVLAASQDGPMRKVAGYFAEAIARRIYR-RRPLSQVDRALDSP--ALEDLLHL--HFYESC 282 689**************************************************.33333222222222..23444444..4* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 P+lkf+h+taNqaIlea++g++rvH+iDf++ qGlQWpaLlqaLa Rp+gppslR+Tg+g+p+s+++++l+++g++L +A+++gv+f GSMUA_Achr1P21300_001 283 PYLKFAHFTANQAILEAFSGCRRVHVIDFGMRQGLQWPALLQALALRPGGPPSLRLTGIGPPQSDHSDALQQVGWKLDMLAKTIGVDF 370 ************************************************************************************ PP GRAS 177 efnvlvakrledleleeLr 195 +++ +va++l+dle ++L GSMUA_Achr1P21300_001 371 RYRGFVASSLADLESRMLL 389 ************99984 PP
2	GRAS	93.6	3.1e-29	432	509	298	374
GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + gaer+erhetl++Wr r+ +aGF+p++l+++a kqa++ll+ ++ +dg+rvee +g+l+lgW++rpL+++SaWr GSMUA_Achr1P21300_001 432 LLEHGAERTERHETLGQWRVRMARAGFEPAHLGSNAFKQASMLLALYAgGDGFRVEETDGCLTLGWHTRPLIATSAWR 509 56789************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	3.2E-33	47	120	IPR021914	Transcriptional factor DELLA, N-terminal
SMART	SM01129	4.7E-28	47	126	No hit	No description
PROSITE profile	PS50985	35.983	174	516	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.2E-63	200	389	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-26	432	509	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MKREHQETGA GGGSGYHVAT AADMAGAKGK MTAASSMGME DDDCGVDELL AALGYKVRSS 60 DMADVAQKLE QLEMAMASTA AAASDDASVL PQIASDTVHY DPSHLAAWLD SMLSELNAPP 120 PPLPPPPPPP AITTVAPLRP SDAYGFKPKR KRTCSPSSSS SWGAEAGRAR GSRTEGASSA 180 KPAAALPVVV VDTQETGIRL VHALMACAEA VQQENLKAAD ALVKHISVLA ASQDGPMRKV 240 AGYFAEAIAR RIYRRRPLSQ VDRALDSPAL EDLLHLHFYE SCPYLKFAHF TANQAILEAF 300 SGCRRVHVID FGMRQGLQWP ALLQALALRP GGPPSLRLTG IGPPQSDHSD ALQQVGWKLD 360 MLAKTIGVDF RYRGFVASSL ADLESRMLLE RDGKGAQDGA GGAAADRDGG GGGGEPQRGH 420 VPGSVHGGAA LLLEHGAERT ERHETLGQWR VRMARAGFEP AHLGSNAFKQ ASMLLALYAG 480 GDGFRVEETD GCLTLGWHTR PLIATSAWRV SAASAH

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MKREHQETGA GGGSGYHVAT AADMAGAKGK MTAASSMGME DDDCGVDELL AALGYKVRSS  60
DMADVAQKLE QLEMAMASTA AAASDDASVL PQIASDTVHY DPSHLAAWLD SMLSELNAPP  120
PPLPPPPPPP AITTVAPLRP SDAYGFKPKR KRTCSPSSSS SWGAEAGRAR GSRTEGASSA  180
KPAAALPVVV VDTQETGIRL VHALMACAEA VQQENLKAAD ALVKHISVLA ASQDGPMRKV  240
AGYFAEAIAR RIYRRRPLSQ VDRALDSPAL EDLLHLHFYE SCPYLKFAHF TANQAILEAF  300
SGCRRVHVID FGMRQGLQWP ALLQALALRP GGPPSLRLTG IGPPQSDHSD ALQQVGWKLD  360
MLAKTIGVDF RYRGFVASSL ADLESRMLLE RDGKGAQDGA GGAAADRDGG GGGGEPQRGH  420
VPGSVHGGAA LLLEHGAERT ERHETLGQWR VRMARAGFEP AHLGSNAFKQ ASMLLALYAG  480
GDGFRVEETD GCLTLGWHTR PLIATSAWRV SAASAH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-34	207	508	25	377	Protein SCARECROW
5b3h_D	1e-34	207	508	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ153046	1e-145	DQ153046.1 Musa AAB Group GRAS transcription factor (GAI5) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009409625.1	0.0	PREDICTED: DELLA protein SLR1-like
Swissprot	Q9ST48	1e-129	DWRF8_MAIZE; DELLA protein DWARF8
TrEMBL	M0S1T8	0.0	M0S1T8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P21300_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	4e-63	GRAS family protein

Publications ? help Back to Top
Tenaillon MI, et al. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6 [PMID:11470895]