PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P22230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARR-B
Protein Properties Length: 723aa    MW: 78317.2 Da    PI: 6.3661
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P22230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.21.8e-28211264155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  GSMUA_Achr1P22230_001 211 KPRVVWSVELHQQFVNAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 264
                            79*******************.********************************8 PP
2Response_reg73.86.7e-25271351109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            +l+vdD+p+ + +++++l + +y +v+++++++ al ll+e++  +Dli+ D+ mp+mdG++ll+     e++lp+i++++    + +
  GSMUA_Achr1P22230_001  27 ILLVDDDPICLAVVQRMLLNCQY-DVTTCSEATRALSLLRENKgaFDLIISDVHMPDMDGFRLLELVGL-EMDLPVIMMSGDTRFNVV 112
                            89*********************.***************999999*******************87754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + ++ Ga dfl+Kp+ +eel +
  GSMUA_Achr1P22230_001 113 MKGVSHGACDFLTKPVRMEELQN 135
                            ********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.7E-1587611IPR017053Response regulator B-type, plant
SuperFamilySSF521725.55E-3624169IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-4024159No hitNo description
SMARTSM004482.2E-2925137IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.55526141IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.5E-2227135IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.50E-2528140No hitNo description
PROSITE profilePS5129411.161208267IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-30208269IPR009057Homeodomain-like
SuperFamilySSF466891.67E-19209268IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-25211264IPR006447Myb domain, plants
PfamPF002497.0E-7213262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MSVGSSYASS KLESDRVPDK FPVGMKILLV DDDPICLAVV QRMLLNCQYD VTTCSEATRA  60
LSLLRENKGA FDLIISDVHM PDMDGFRLLE LVGLEMDLPV IMMSGDTRFN VVMKGVSHGA  120
CDFLTKPVRM EELQNIWQHV VRRKWLDSKE IERSGSVEEA DRGRQVTDDS EYASTVNDGI  180
DCSWKYQRKK RDAKEEDDNE LDNIDPSSSK KPRVVWSVEL HQQFVNAVNQ LGIDKAVPKR  240
ILELMNVPGL TRENVASHLQ KFRLYLKRLS GVAQHHTGLN SPLYGASSNA KVGQLGRFDF  300
QALAVSGQIS PETLAALQDE LLGHPPCNLA MPTIDQQVLQ QASVQRNNSV TFERGIAFGQ  360
PLLKGQAVSS FPVWPANDLG ALGSASNLGG LNTSQNSNML MTMLQQPQPQ TVPSESNHAI  420
NVQRSCLVAP AKSSNKFQVQ GNPMHINQDS TIISSQSSAN FQPGNAVVPV IQDSAVVTSN  480
SSTSLKTGNN LFVTNHRSTI LPSQSLTGIS LGTDSGLLNQ GSIIVPSQPL NSSQAGSNSI  540
LSSQNSMLVP SHLSGSLRTD KNIIPITHNS SLNNSSSLVN YNRLPTQSNV MPSSMKQVLD  600
NLAALHSPDI SISHPNGTHS LVPSSCNIEA TDRLLVKLPD KGLGKNLGFV GKGTCLPSRF  660
AVDDIESPTN DLTNSSAYTG DDGYLQNQDI FGISGTLQSG HCATTSFKLS IDIQSQSSNQ  720
AMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22207270164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408461.10.0PREDICTED: two-component response regulator ORR21
RefseqXP_009408473.10.0PREDICTED: two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLM0S2310.0M0S231_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P22230_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-116response regulator 2