PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P22470_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 532aa    MW: 58658 Da    PI: 5.3679
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P22470_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS335.88e-1031385312374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevs 88 
                             +lL+ecA+av+ +d +++q+l+++l+e +sp+gd+ q++aayf+++L arl++s++++  +l++ ++++  s +++  + l f+e+s
  GSMUA_Achr1P22470_001 138 SQLLVECARAVAGRDSQRVQQLMWTLNEVSSPYGDTEQKVAAYFLQGLFARLTSSGPRTLCSLSAASDRNC-SFDSTRRTALrFQELS 224
                            589*******************************************************9998888877743.44444444446***** PP

                   GRAS  89 PilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLakf 168
                            P+  f+h++aN aIlea+       +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s+ s     ++ ++e+g+r++kf
  GSMUA_Achr1P22470_001 225 PWSSFGHVAANGAILEAFLDPssalQRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLTITTVVSSVSPsssVQRVMKEIGKRMEKF 312
                            ******************876677899*************************8889*******99865556768999*********** PP

                   GRAS 169 Aeelgvpfefnvlvak.rledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.. 251
                            A+ +gvpf+fnv+++  +l+dl+l++L++++  g ala+n+v +lh +     +   +rde+++ +++l+P++v+vve+ead++++  
  GSMUA_Achr1P22470_001 313 ARLMGVPFRFNVVHHAgDLSDLDLDSLDLREgsGVALAINCVNALHGIS----PAGRRRDELISSLRRLQPRIVTVVEEEADLGGGeg 396
                            ************97767**************8899*************8....6666789***********************66668 PP

                   GRAS 252 .......sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                    Fl++f e++++++a f+sle+++pr+s+er  +Er   gr++v++vac  a++ er+et++ W++r+++aGF p+++se+
  GSMUA_Achr1P22470_001 397 ggeeageAFLKGFRESVRFFTAYFESLEESFPRTSNERLALERS-AGRAVVDLVACPAADSAERRETAAGWSRRMRAAGFAPAAFSED 483
                            9999999*************************************.******************************************* PP

                   GRAS 333 aakqaklllrkvk.sdgyrve.....eesgslvlgWkdrpLvsvSaWr 374
                            +a+++++llr++  ++ +r       e  g ++l Wk++p+v++SaW+
  GSMUA_Achr1P22470_001 484 VADDVRALLRRYReGWSMRAAaeeseEAAGGIFLDWKEQPVVWASAWK 531
                            *************44444444655545589999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.499111505IPR005202Transcription factor GRAS
PfamPF035142.8E-100138531IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MDTLFRFVSP QSSHQQSSYS LSRSSSSSRS SEAPQINYKD YYYYFHQEQE EQQQQYYQEE  60
CGTNHLVYMD EDFSSSSSSK HLHHPHRPPS STTSTTTPAP TPIFDPADLS FPHDLNLDFS  120
SPSSSAVGAS GAGGRWASQL LVECARAVAG RDSQRVQQLM WTLNEVSSPY GDTEQKVAAY  180
FLQGLFARLT SSGPRTLCSL SAASDRNCSF DSTRRTALRF QELSPWSSFG HVAANGAILE  240
AFLDPSSALQ RLHILDLSNT FCTQWPTLLE ALATRSSDDT PHLTITTVVS SVSPSSSVQR  300
VMKEIGKRME KFARLMGVPF RFNVVHHAGD LSDLDLDSLD LREGSGVALA INCVNALHGI  360
SPAGRRRDEL ISSLRRLQPR IVTVVEEEAD LGGGEGGGEE AGEAFLKGFR ESVRFFTAYF  420
ESLEESFPRT SNERLALERS AGRAVVDLVA CPAADSAERR ETAAGWSRRM RAAGFAPAAF  480
SEDVADDVRA LLRRYREGWS MRAAAEESEE AAGGIFLDWK EQPVVWASAW KP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-17411953269474Protein SHORT-ROOT
5b3h_B1e-17411953215420Protein SHORT-ROOT
5b3h_E1e-17411953215420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408186.10.0PREDICTED: protein SHORT-ROOT 1-like
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLM0S2550.0M0S255_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P22470_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-149GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]