PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P22880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 619aa    MW: 66559.3 Da    PI: 5.7007
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P22880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.51.9e-07259279526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C+++++ G C++Gd C +aHg
  GSMUA_Achr1P22880_001 259 PCPDYRK-GACRRGDMCEYAHG 279
                            8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127966.1E-874145IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.0E-1477155IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.86577152IPR020683Ankyrin repeat-containing domain
SMARTSM002482.377107IPR002110Ankyrin repeat
CDDcd002046.43E-1377157No hitNo description
Gene3DG3DSA:1.25.40.201.3E-1578156IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0069112144IPR002110Ankyrin repeat
PROSITE profilePS5008811.621112147IPR002110Ankyrin repeat
SMARTSM003566.2E-6254280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4258281IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-5259279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.488259281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4287318IPR000571Zinc finger, CCCH-type
SMARTSM0035671289312IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MCGGPERVGP SSPSPASRED NGVMDYITDD SFSSLLELAA NNDAGGFRRS LDRDPSAVDE  60
VCLWYGREKG SNRMVLERHT PLMVAATYGS LDVLGLLLSS PSVLVNRASG RDRATALHCA  120
ASGGSPDAAD AVRLLLSAGA DPDLVDANGR RPADVVIVPP KLPDPLSSSL DSDGSPSITT  180
KASELQPPAV PEKKEYPVDP SLPDIKNSIY ATDEFRMYSF KVRPCSRAYS HDWTECPFVH  240
PGENARRRDP RKYHYSCVPC PDYRKGACRR GDMCEYAHGV FECWLHPAQY RTRPCKDGTS  300
CSRRVCFFAH TNEELRPLHT ATDSALPSPL SSASAAMEMA AALSLMPGSS SSVSSVMSPF  360
TPPMSPSANG IGHSSFSWAH SNMPAVHLPG SNLQSSRLRA SLSARDMPVD DPIARAKAFT  420
LDDIFSAEPT SSPKYNSDQG AIFSPSHITA ALNQFQRQQQ SLLSPINTSI SPVSSHLSLL  480
AQREKQKLML RSLSSRDAGS GTSPVVGSPV NHSWLKWASP TSSLDWEVNG EELGCLRQPS  540
SFELQATGEE PDLSWVHSLV RDSPTENVVA ASGAPAGLSS SPHANGIEGL NRDGQSDDLD  600
QAALLGSWLD QLQLDQMVI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407642.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
RefseqXP_018673777.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLM0S2960.0M0S296_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P22880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-172CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]