PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P23090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 291aa    MW: 32122.6 Da    PI: 6.172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P23090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-18107157256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                            +ykGVr+++ +g+W+AeIrdp    +r +r +lg+f taeeAa+a+ aa+ +le e
  GSMUA_Achr1P23090_001 107 RYKGVRQRR-WGKWAAEIRDP----IRgARLWLGTFATAEEAAAAYRAAASRLEEE 157
                            69****998.**********7....246************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-22107161IPR001471AP2/ERF domain
PfamPF008471.5E-12107157IPR001471AP2/ERF domain
CDDcd000188.28E-15107137No hitNo description
SMARTSM003801.2E-18107170IPR001471AP2/ERF domain
PROSITE profilePS5103220.56107164IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-17107157IPR016177DNA-binding domain
PRINTSPR003674.1E-10108119IPR001471AP2/ERF domain
PRINTSPR003674.1E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKKLDCLGSI RDLKPPMMMK RRSSGKLDGS KAVGSSPVKR IRVFFTDPDA TDSDDGDEAL  60
IDKSKRVVCE IHVDPIGKTL KTLADPERKK KEAVTRLAAP SPAAAGRYKG VRQRRWGKWA  120
AEIRDPIRGA RLWLGTFATA EEAAAAYRAA ASRLEEEKRC LRRPAPAPAP ASAAEDSASS  180
WASAPSSSSL LAPPAAQEAE EEERSIAELF AEVPAEVDFV GLDGDAPFFV GEVGDDFGLD  240
DLLLWDQPLD DHSRWLFWLR FCFCYPSLRM INIVLLSLIS LFLTEHNHRN T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-13108164663ATERF1
3gcc_A2e-13108164663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407425.11e-175PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLM0S2B70.0M0S2B7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P23090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-14cytokinin response factor 4