PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P23640_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 251aa    MW: 27527.8 Da    PI: 5.2034
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P23640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.21.1e-1584132755
                            HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                            +rr+ +NRe+ArrsR+RK+a ++ Le  v+ L +eN++L k+l   ++e
  GSMUA_Achr1P23640_001  84 TRRMVSNRESARRSRKRKQAHLADLESQVDLLRGENESLFKQLTDANQE 132
                            79*************************************9777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.0E-1477142IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.88E-1284132No hitNo description
PfamPF001701.2E-1284132IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.8E-1185134No hitNo description
CDDcd147021.71E-1985133No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.41585132IPR004827Basic-leucine zipper domain
PfamPF124986.1E-8149224IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSAFYVSDGT PTSSHKLLAK ANQTLGGTSG SEQSDEESLE IEGGPCEQST DAIDIKRLRR  60
EGQSRLLFMK KGINQPVFIH EGVTRRMVSN RESARRSRKR KQAHLADLES QVDLLRGENE  120
SLFKQLTDAN QEFTEAVTNN RVLKSNVEAL RIKVKMAEDL VTRGSLACSL DHLLQSSVGS  180
PQFLNPQLPC EESSDFLPTI EFQGDDSSYI GIPTDGRAQN VGMETGNAKT AALSCVTDIW  240
ACDSNTGTML K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100RRSRKRK
294101RRSRKRKQ
396101SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415024.11e-175PREDICTED: basic leucine zipper 9-like isoform X1
SwissprotQ6H5001e-66RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLM0S2H10.0M0S2H1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P23640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.15e-50basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]