PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P25890_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 159aa    MW: 16231.5 Da    PI: 11.0893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P25890_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-203179355
                    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           y+GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g
  GSMUA_Achr1P25890_001 31 YRGVRKRP-WGRYAAEIRDPA---KKCRVWLGTFDTAEEAARAYDAAARRFRG 79
                           9*******.**********84...36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-323087IPR001471AP2/ERF domain
PfamPF008475.1E-143079IPR001471AP2/ERF domain
SMARTSM003806.2E-373093IPR001471AP2/ERF domain
PROSITE profilePS5103223.8683087IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-223187IPR016177DNA-binding domain
PRINTSPR003671.9E-113142IPR001471AP2/ERF domain
CDDcd000188.00E-153186No hitNo description
PRINTSPR003671.9E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MAPRVKASRT GDGCGGGGGC RGGGDGKGAS YRGVRKRPWG RYAAEIRDPA KKCRVWLGTF  60
DTAEEAARAY DAAARRFRGP KAKTNFSCPP TTSAAGASAG AASSSPSVST VESSTPPRRP  120
SVRIPALDLG LPHPSARIPF AHCVPAAACP LRLGLVVGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-222786262ATERF1
3gcc_A2e-222786262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418086.11e-102PREDICTED: ethylene-responsive transcription factor 11-like
SwissprotQ9FE679e-33ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLM0S3461e-106M0S346_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P25890_0011e-107(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.18e-20ERF domain protein 11
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]