PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P26300_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 239aa MW: 27076.2 Da PI: 5.0938

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P26300_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.1	1.2e-11	73	115	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L GSMUA_Achr1P26300_001 73 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 115 79*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.269	66	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-16	70	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-12	72	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.39E-5	73	120	No hit	No description
Pfam	PF00010	2.3E-9	73	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-15	73	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MELDEHGFLE ELMSLRRDAW DSFPAAMGEF FSCDGSLDCF QQTPGLVPPS FTAFDAGRKK 60 KKKLEGMPSK NLMAERRRRK RLNDRLSMLR SVVPKISKMD RTSILGDTID YMKELLERIK 120 HLQEEIEVGP EQANLLSIIK ELNSDEVLVR NSPKFDVERR ENDTRIEICC AAKPGLLLST 180 VNTLEALGME IQQCVISCFN DFGMQASCSE LDMDPRTVVS AEDIKQALFR NAGYGGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	63	GRKKKKKL
2	60	80	KKKLEGMPSKNLMAERRRRKR
3	74	81	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009408201.1	1e-122	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	2e-82	BH093_ARATH; Transcription factor bHLH93
TrEMBL	M0S387	1e-175	M0S387_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P26300_001	1e-176	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1302	37	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-84	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]