PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P26400_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 623aa    MW: 68089.2 Da    PI: 7.3871
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P26400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.5e-10551599653
                            HHHCHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   6 rerrkqkNReAArr.sRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                            r +r++kNRe+A r  R  K+a++ eLe+ v+ L +eN++Lk   eel 
  GSMUA_Achr1P26400_001 551 RKKRMIKNRESAARlIRVPKQAYTSELETAVEHLLEENRKLKLMYEELL 599
                            89********987747**********************87775555443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.63E-28273365IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5096126.074276365IPR006630RNA-binding protein Lupus La
Gene3DG3DSA:1.10.10.101.2E-27279356IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM007152.1E-28280356IPR006630RNA-binding protein Lupus La
CDDcd073231.55E-33285355No hitNo description
PfamPF053839.6E-24286341IPR006630RNA-binding protein Lupus La
SMARTSM003381.2E-4546611IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.3E-9549602No hitNo description
SuperFamilySSF579593.05E-6551601No hitNo description
CDDcd147071.46E-16551600No hitNo description
PfamPF001701.8E-8551601IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010150Biological Processleaf senescence
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MSQASHPSAF SADAAWNPPP EPPERSSPPG ETCDAAVGWR TAESEEHRNG GNAAGDRGWT  60
PAWSVPANGA SEAGPVMGAD CWPSLPESAS SAANHGPGAS QEPHFISEMP PVSVDTSQGS  120
SPQGIADHGN SNLGRHRRDE FLPQLQSGSN NQRSGYGGNK RGNAHHRRHG SRRDQEQGGY  180
DWSGPRGFSG RDSHILMPLP QQRGQSQPFI RAPPPPTTAP FVGMPPYFRP FVSPLGYPEF  240
HSALYYLPPP PPTDTLRSMP FIAHQLPHMN PPAMFLPPAD HQRFMLVKQI EYYFSPDNLC  300
KDLFLRRNMD DQGWVPISLI ASFNRVKQLT RDMPHILDAV RGSTVVEVQG EKIRKRGDWM  360
KWMMPPTPNQ YDLASGSQSP LTPGYDSVIA HMHTFGLDEG SSHHSMIGSS PMTSSSSSMA  420
PSQTPGKAME EVEVWKDISL SSLNQDMPST PPLSLHYHHD SNPTSTSTYV AGVTVQDLLS  480
GAFRVADPIP PTCCVRRPAT LSLGSGQFLD CLSPNSNCSN SDGSFSSCSA GFAMIRNGAF  540
ENGDGTVVDG RKKRMIKNRE SAARLIRVPK QAYTSELETA VEHLLEENRK LKLMYEELLK  600
QTMVAQPPAA KKRKLQRTST APF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018677758.10.0PREDICTED: la-related protein 1C-like isoform X1
TrEMBLM0S3970.0M0S397_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P26400_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.13e-17bZIP family protein