PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P26550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 142aa    MW: 15621.9 Da    PI: 10.2269
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P26550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-193367135
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C+ C+ttkTplWR gp+g+k+LCnaCG++yrk ++
  GSMUA_Achr1P26550_001 33 CTGCRTTKTPLWRAGPSGPKSLCNACGIRYRKSRR 67
                           9*******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-152785IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.5472781IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-142871No hitNo description
Gene3DG3DSA:3.30.50.104.4E-162970IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.41E-133281No hitNo description
PfamPF003207.0E-173367IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MEQMECDRRQ LWPDPMSSGG SDPSSSDSQL KSCTGCRTTK TPLWRAGPSG PKSLCNACGI  60
RYRKSRRAVP RFEDAGAKEK REVDGGGEAF GVSFKLLMLG SGLCKPTSMD RKQRRRRRRG  120
VLGEEEQAAV LLMALSSGFL YA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109116DRKQRRRR
2110118RKQRRRRRR
3112118QRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418851.13e-99PREDICTED: GATA transcription factor 16-like
SwissprotQ9FJ101e-28GAT16_ARATH; GATA transcription factor 16
TrEMBLM0S3B28e-98M0S3B2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P26550_0011e-98(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.18e-30GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]